Hb_001195_310

Information

Type -
Description -
Location Contig1195: 176376-181800
Sequence    

Annotation

kegg
ID rcu:RCOM_1594220
description ATP binding protein, putative
nr
ID XP_002510383.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9LN50
description Probable methyltransferase PMT28 OS=Arabidopsis thaliana GN=At1g19430 PE=2 SV=1
trembl
ID B9R7U0
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1594220 PE=4 SV=1
Gene Ontology
ID GO:0005768
description probable methyltransferase pmt28

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05813: 176275-181606 , PASA_asmbl_05814: 176280-176692 , PASA_asmbl_05815: 179065-179416
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_310 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_000167_040 0.0679852091 - - PREDICTED: serine carboxypeptidase-like [Jatropha curcas]
3 Hb_001969_140 0.0691885139 - - PREDICTED: uncharacterized protein LOC105634929 [Jatropha curcas]
4 Hb_000679_040 0.0730456457 - - Cellulose synthase 1 [Theobroma cacao]
5 Hb_020586_010 0.0848346235 - - Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis]
6 Hb_000997_070 0.0900096531 - - PREDICTED: ureidoglycolate hydrolase isoform X1 [Jatropha curcas]
7 Hb_011310_050 0.0919495059 - - PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Jatropha curcas]
8 Hb_001216_110 0.0960636372 - - PREDICTED: protein GPR107-like [Jatropha curcas]
9 Hb_010381_020 0.1007651222 - - Endosomal P24A protein precursor, putative [Ricinus communis]
10 Hb_000418_020 0.1057777894 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
11 Hb_000638_060 0.1061992292 - - PREDICTED: probable methyltransferase PMT26 [Jatropha curcas]
12 Hb_000254_070 0.1063257548 - - PREDICTED: protein disulfide isomerase-like 1-6 [Jatropha curcas]
13 Hb_021576_070 0.1075365881 - - hypothetical protein PRUPE_ppa002736mg [Prunus persica]
14 Hb_000012_400 0.1082369706 - - PREDICTED: K(+) efflux antiporter 6 [Jatropha curcas]
15 Hb_028639_030 0.1099524845 - - PREDICTED: transmembrane 9 superfamily member 2-like [Jatropha curcas]
16 Hb_000003_310 0.1125711319 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
17 Hb_002217_080 0.1141712211 - - PREDICTED: probable beta-1,3-galactosyltransferase 16 [Jatropha curcas]
18 Hb_003006_080 0.1145520594 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like isoform X1 [Jatropha curcas]
19 Hb_000684_310 0.1149594383 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
20 Hb_001105_130 0.1179014628 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]

Gene co-expression network

sample Hb_001195_310 Hb_001195_310 Hb_000167_040 Hb_000167_040 Hb_001195_310--Hb_000167_040 Hb_001969_140 Hb_001969_140 Hb_001195_310--Hb_001969_140 Hb_000679_040 Hb_000679_040 Hb_001195_310--Hb_000679_040 Hb_020586_010 Hb_020586_010 Hb_001195_310--Hb_020586_010 Hb_000997_070 Hb_000997_070 Hb_001195_310--Hb_000997_070 Hb_011310_050 Hb_011310_050 Hb_001195_310--Hb_011310_050 Hb_000167_040--Hb_011310_050 Hb_000167_040--Hb_001969_140 Hb_000167_040--Hb_000997_070 Hb_000167_040--Hb_000679_040 Hb_010381_020 Hb_010381_020 Hb_000167_040--Hb_010381_020 Hb_001216_110 Hb_001216_110 Hb_001969_140--Hb_001216_110 Hb_001969_140--Hb_000679_040 Hb_001969_140--Hb_011310_050 Hb_000959_300 Hb_000959_300 Hb_001969_140--Hb_000959_300 Hb_000679_040--Hb_001216_110 Hb_000679_040--Hb_011310_050 Hb_000254_070 Hb_000254_070 Hb_000679_040--Hb_000254_070 Hb_021576_070 Hb_021576_070 Hb_000679_040--Hb_021576_070 Hb_020586_010--Hb_001969_140 Hb_002129_020 Hb_002129_020 Hb_020586_010--Hb_002129_020 Hb_000003_310 Hb_000003_310 Hb_020586_010--Hb_000003_310 Hb_020586_010--Hb_001216_110 Hb_020586_010--Hb_000679_040 Hb_000562_100 Hb_000562_100 Hb_000997_070--Hb_000562_100 Hb_000997_070--Hb_010381_020 Hb_000997_070--Hb_001969_140 Hb_000418_020 Hb_000418_020 Hb_000997_070--Hb_000418_020 Hb_011310_050--Hb_001216_110 Hb_059741_010 Hb_059741_010 Hb_011310_050--Hb_059741_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.26416 3.9149 5.02541 13.3222 2.48445 1.64159
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.09556 0.849972 1.16021 4.73099 8.53998

CAGE analysis