Hb_001195_400

Information

Type -
Description -
Location Contig1195: 235734-245540
Sequence    

Annotation

kegg
ID rcu:RCOM_1594100
description glucose-6-phosphate isomerase, putative (EC:5.3.1.9)
nr
ID XP_002510371.1
description glucose-6-phosphate isomerase, putative [Ricinus communis]
swissprot
ID Q9FXM5
description Glucose-6-phosphate isomerase, cytosolic OS=Arabidopsis halleri subsp. gemmifera GN=PGIC PE=3 SV=2
trembl
ID B9R7S8
description Glucose-6-phosphate isomerase OS=Ricinus communis GN=RCOM_1594100 PE=3 SV=1
Gene Ontology
ID GO:0005737
description cytosolic phosphoglucose isomerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05829: 238050-238562
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_400 0.0 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
2 Hb_000078_140 0.0619800791 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
3 Hb_170138_010 0.0619922115 - - conserved hypothetical protein [Ricinus communis]
4 Hb_012733_040 0.0651724123 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
5 Hb_000359_210 0.0656201612 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000185_220 0.0673160486 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
7 Hb_003206_110 0.0686097224 - - Putative 1-aminocyclopropane-1-carboxylate deaminase [Gossypium arboreum]
8 Hb_005601_040 0.0702886402 - - Histone deacetylase 1 isoform 1 [Theobroma cacao]
9 Hb_003878_150 0.0726324169 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
10 Hb_004452_120 0.0747900202 - - PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]
11 Hb_012393_030 0.075564033 - - NADP-dependent isocitrate dehydrogenase family protein [Populus trichocarpa]
12 Hb_035273_020 0.0759741976 - - PREDICTED: amidase 1-like isoform X1 [Jatropha curcas]
13 Hb_000046_540 0.0768848503 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
14 Hb_005725_130 0.0771010596 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
15 Hb_015675_040 0.0771019658 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
16 Hb_005976_080 0.0773575362 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
17 Hb_000656_010 0.0778498689 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
18 Hb_001975_150 0.0783382015 - - PREDICTED: RINT1-like protein MAG2L [Jatropha curcas]
19 Hb_003581_200 0.0784999117 - - PREDICTED: uncharacterized protein LOC105640179 [Jatropha curcas]
20 Hb_074197_040 0.0785635289 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]

Gene co-expression network

sample Hb_001195_400 Hb_001195_400 Hb_000078_140 Hb_000078_140 Hb_001195_400--Hb_000078_140 Hb_170138_010 Hb_170138_010 Hb_001195_400--Hb_170138_010 Hb_012733_040 Hb_012733_040 Hb_001195_400--Hb_012733_040 Hb_000359_210 Hb_000359_210 Hb_001195_400--Hb_000359_210 Hb_000185_220 Hb_000185_220 Hb_001195_400--Hb_000185_220 Hb_003206_110 Hb_003206_110 Hb_001195_400--Hb_003206_110 Hb_000139_080 Hb_000139_080 Hb_000078_140--Hb_000139_080 Hb_079526_040 Hb_079526_040 Hb_000078_140--Hb_079526_040 Hb_074197_040 Hb_074197_040 Hb_000078_140--Hb_074197_040 Hb_032202_220 Hb_032202_220 Hb_000078_140--Hb_032202_220 Hb_003098_070 Hb_003098_070 Hb_000078_140--Hb_003098_070 Hb_170138_010--Hb_003206_110 Hb_170138_010--Hb_000185_220 Hb_004046_030 Hb_004046_030 Hb_170138_010--Hb_004046_030 Hb_170138_010--Hb_000359_210 Hb_000684_210 Hb_000684_210 Hb_170138_010--Hb_000684_210 Hb_001242_120 Hb_001242_120 Hb_012733_040--Hb_001242_120 Hb_002301_100 Hb_002301_100 Hb_012733_040--Hb_002301_100 Hb_000364_050 Hb_000364_050 Hb_012733_040--Hb_000364_050 Hb_004452_120 Hb_004452_120 Hb_012733_040--Hb_004452_120 Hb_003159_050 Hb_003159_050 Hb_012733_040--Hb_003159_050 Hb_002897_090 Hb_002897_090 Hb_000359_210--Hb_002897_090 Hb_002027_080 Hb_002027_080 Hb_000359_210--Hb_002027_080 Hb_002874_110 Hb_002874_110 Hb_000359_210--Hb_002874_110 Hb_004679_030 Hb_004679_030 Hb_000359_210--Hb_004679_030 Hb_000359_210--Hb_003206_110 Hb_006059_010 Hb_006059_010 Hb_000185_220--Hb_006059_010 Hb_000185_220--Hb_003206_110 Hb_001080_300 Hb_001080_300 Hb_000185_220--Hb_001080_300 Hb_000309_050 Hb_000309_050 Hb_000185_220--Hb_000309_050 Hb_001975_150 Hb_001975_150 Hb_000185_220--Hb_001975_150 Hb_003206_110--Hb_004046_030 Hb_006277_010 Hb_006277_010 Hb_003206_110--Hb_006277_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.24236 3.32597 6.83519 8.21756 3.0619 4.85165
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.88434 4.39869 5.39935 7.02416 9.80538

CAGE analysis