Hb_001195_420

Information

Type -
Description -
Location Contig1195: 249787-251751
Sequence    

Annotation

kegg
ID rcu:RCOM_1593970
description hypothetical protein
nr
ID XP_012071824.1
description PREDICTED: uncharacterized protein LOC105633774 isoform X4 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L310
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04414 PE=4 SV=1
Gene Ontology
ID GO:0050896
description sugar isoform partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05833: 249846-251581
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_420 0.0 - - PREDICTED: uncharacterized protein LOC105633774 isoform X4 [Jatropha curcas]
2 Hb_001009_150 0.094419915 - - Glyceraldehyde-3-phosphate dehydrogenase [Gossypium arboreum]
3 Hb_003430_080 0.0979743722 - - zinc finger protein, putative [Ricinus communis]
4 Hb_000363_180 0.1048084302 - - PREDICTED: uncharacterized protein LOC105633052 [Jatropha curcas]
5 Hb_005694_180 0.1108002945 - - PREDICTED: cytochrome b5 [Jatropha curcas]
6 Hb_000012_400 0.1161890105 - - PREDICTED: K(+) efflux antiporter 6 [Jatropha curcas]
7 Hb_001221_390 0.1187098184 - - Phospholipase C 4 precursor, putative [Ricinus communis]
8 Hb_034507_060 0.1193633476 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Citrus sinensis]
9 Hb_023226_030 0.1254513202 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-14-like [Jatropha curcas]
10 Hb_000309_030 0.1277894305 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]
11 Hb_000220_080 0.1294588261 - - kinase, putative [Ricinus communis]
12 Hb_000196_010 0.1322609897 - - Patellin-5, putative [Ricinus communis]
13 Hb_002316_170 0.1334996939 - - purine permease, putative [Ricinus communis]
14 Hb_010050_020 0.1366775494 - - PREDICTED: uncharacterized protein LOC102601222 [Solanum tuberosum]
15 Hb_002539_050 0.1385734254 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
16 Hb_000318_040 0.1402945161 - - hypothetical protein JCGZ_04877 [Jatropha curcas]
17 Hb_000950_040 0.1403474574 - - cation-transporting atpase plant, putative [Ricinus communis]
18 Hb_009745_010 0.1425485934 - - cellulose synthase-like protein [Populus tomentosa]
19 Hb_010407_030 0.1436929381 - - PREDICTED: casein kinase I-like [Jatropha curcas]
20 Hb_006949_060 0.1439283116 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]

Gene co-expression network

sample Hb_001195_420 Hb_001195_420 Hb_001009_150 Hb_001009_150 Hb_001195_420--Hb_001009_150 Hb_003430_080 Hb_003430_080 Hb_001195_420--Hb_003430_080 Hb_000363_180 Hb_000363_180 Hb_001195_420--Hb_000363_180 Hb_005694_180 Hb_005694_180 Hb_001195_420--Hb_005694_180 Hb_000012_400 Hb_000012_400 Hb_001195_420--Hb_000012_400 Hb_001221_390 Hb_001221_390 Hb_001195_420--Hb_001221_390 Hb_002739_120 Hb_002739_120 Hb_001009_150--Hb_002739_120 Hb_010407_030 Hb_010407_030 Hb_001009_150--Hb_010407_030 Hb_000318_040 Hb_000318_040 Hb_001009_150--Hb_000318_040 Hb_006949_060 Hb_006949_060 Hb_001009_150--Hb_006949_060 Hb_028077_020 Hb_028077_020 Hb_001009_150--Hb_028077_020 Hb_003430_080--Hb_005694_180 Hb_000003_030 Hb_000003_030 Hb_003430_080--Hb_000003_030 Hb_000740_090 Hb_000740_090 Hb_003430_080--Hb_000740_090 Hb_023226_030 Hb_023226_030 Hb_003430_080--Hb_023226_030 Hb_003430_080--Hb_001009_150 Hb_000196_010 Hb_000196_010 Hb_000363_180--Hb_000196_010 Hb_009745_010 Hb_009745_010 Hb_000363_180--Hb_009745_010 Hb_000732_230 Hb_000732_230 Hb_000363_180--Hb_000732_230 Hb_000950_040 Hb_000950_040 Hb_000363_180--Hb_000950_040 Hb_000363_180--Hb_001009_150 Hb_034507_060 Hb_034507_060 Hb_005694_180--Hb_034507_060 Hb_005694_180--Hb_023226_030 Hb_000309_030 Hb_000309_030 Hb_005694_180--Hb_000309_030 Hb_012760_090 Hb_012760_090 Hb_005694_180--Hb_012760_090 Hb_003849_120 Hb_003849_120 Hb_000012_400--Hb_003849_120 Hb_010050_020 Hb_010050_020 Hb_000012_400--Hb_010050_020 Hb_000012_400--Hb_010407_030 Hb_000562_100 Hb_000562_100 Hb_000012_400--Hb_000562_100 Hb_001195_310 Hb_001195_310 Hb_000012_400--Hb_001195_310 Hb_000012_400--Hb_001009_150 Hb_001221_390--Hb_010050_020 Hb_005724_040 Hb_005724_040 Hb_001221_390--Hb_005724_040 Hb_000318_170 Hb_000318_170 Hb_001221_390--Hb_000318_170 Hb_000085_380 Hb_000085_380 Hb_001221_390--Hb_000085_380 Hb_000791_050 Hb_000791_050 Hb_001221_390--Hb_000791_050 Hb_001221_390--Hb_012760_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.6794 35.967 47.1338 73.5414 10.4273 9.40703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.71636 2.24803 3.5851 41.5346 22.8187

CAGE analysis