Hb_001195_440

Information

Type transcription factor
Description TF Family: OFP
Location Contig1195: 259941-260957
Sequence    

Annotation

kegg
ID rcu:RCOM_1593940
description hypothetical protein
nr
ID XP_002510365.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9ZU65
description Transcription repressor OFP7 OS=Arabidopsis thaliana GN=OFP7 PE=2 SV=1
trembl
ID B9R7S2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1593940 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_440 0.0 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
2 Hb_006153_200 0.0706260155 - - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Theobroma cacao]
3 Hb_001901_010 0.1221677694 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
4 Hb_164162_020 0.1354291259 - - PREDICTED: uncharacterized protein LOC105646964 [Jatropha curcas]
5 Hb_001971_070 0.1377847664 - - unnamed protein product [Coffea canephora]
6 Hb_004544_080 0.1440332158 - - lectin protein kinase [Populus trichocarpa]
7 Hb_006538_070 0.1450556197 - - hypothetical protein JCGZ_18339 [Jatropha curcas]
8 Hb_003462_150 0.1454160143 - - PREDICTED: chitinase 1-like [Eucalyptus grandis]
9 Hb_002999_090 0.1458578648 - - conserved hypothetical protein [Ricinus communis]
10 Hb_010571_010 0.149496874 - - PREDICTED: non-symbiotic hemoglobin 2 [Jatropha curcas]
11 Hb_045992_010 0.1512166057 - - -
12 Hb_001218_020 0.1536291721 transcription factor TF Family: MYB hypothetical protein POPTR_0005s17080g [Populus trichocarpa]
13 Hb_106204_010 0.1574628622 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000141_230 0.1592177993 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Camelina sativa]
15 Hb_000005_270 0.1648574768 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
16 Hb_000608_080 0.1649820062 - - hypothetical protein JCGZ_22216 [Jatropha curcas]
17 Hb_002499_020 0.1669757252 - - hevamine-A precursor, putative [Ricinus communis]
18 Hb_007181_080 0.1705698063 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
19 Hb_000948_070 0.1707990961 - - hypothetical protein POPTR_0016s01720g [Populus trichocarpa]
20 Hb_000521_340 0.1720593954 - - PREDICTED: beta-glucosidase 13-like [Jatropha curcas]

Gene co-expression network

sample Hb_001195_440 Hb_001195_440 Hb_006153_200 Hb_006153_200 Hb_001195_440--Hb_006153_200 Hb_001901_010 Hb_001901_010 Hb_001195_440--Hb_001901_010 Hb_164162_020 Hb_164162_020 Hb_001195_440--Hb_164162_020 Hb_001971_070 Hb_001971_070 Hb_001195_440--Hb_001971_070 Hb_004544_080 Hb_004544_080 Hb_001195_440--Hb_004544_080 Hb_006538_070 Hb_006538_070 Hb_001195_440--Hb_006538_070 Hb_006153_200--Hb_001901_010 Hb_002999_090 Hb_002999_090 Hb_006153_200--Hb_002999_090 Hb_045992_010 Hb_045992_010 Hb_006153_200--Hb_045992_010 Hb_001218_020 Hb_001218_020 Hb_006153_200--Hb_001218_020 Hb_003462_150 Hb_003462_150 Hb_006153_200--Hb_003462_150 Hb_001901_010--Hb_002999_090 Hb_001901_010--Hb_164162_020 Hb_001901_010--Hb_001971_070 Hb_001901_010--Hb_003462_150 Hb_001901_010--Hb_004544_080 Hb_164162_020--Hb_006538_070 Hb_164162_020--Hb_001971_070 Hb_000948_070 Hb_000948_070 Hb_164162_020--Hb_000948_070 Hb_166813_010 Hb_166813_010 Hb_164162_020--Hb_166813_010 Hb_006538_050 Hb_006538_050 Hb_164162_020--Hb_006538_050 Hb_001971_070--Hb_004544_080 Hb_001971_070--Hb_003462_150 Hb_001971_070--Hb_006538_070 Hb_001971_070--Hb_002999_090 Hb_004544_080--Hb_003462_150 Hb_000141_230 Hb_000141_230 Hb_004544_080--Hb_000141_230 Hb_000608_080 Hb_000608_080 Hb_004544_080--Hb_000608_080 Hb_004544_080--Hb_002999_090 Hb_002556_020 Hb_002556_020 Hb_004544_080--Hb_002556_020 Hb_002475_020 Hb_002475_020 Hb_004544_080--Hb_002475_020 Hb_006538_070--Hb_001901_010 Hb_006538_070--Hb_000948_070 Hb_006538_070--Hb_006538_050 Hb_000005_270 Hb_000005_270 Hb_006538_070--Hb_000005_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0832532 0 0.184373 0.0217415 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.737419 0

CAGE analysis