Hb_001195_450

Information

Type -
Description -
Location Contig1195: 262089-265981
Sequence    

Annotation

kegg
ID rcu:RCOM_1593930
description hypothetical protein
nr
ID XP_012071818.1
description PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9R7S1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1593930 PE=4 SV=1
Gene Ontology
ID GO:0016458
description dentin sialophosphoprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05834: 262221-262764 , PASA_asmbl_05835: 263319-264181 , PASA_asmbl_05837: 264674-265413
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_450 0.0 - - PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]
2 Hb_001723_060 0.0682053234 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: LOW QUALITY PROTEIN: dihydrolipoyl dehydrogenase 2, mitochondrial [Populus euphratica]
3 Hb_002762_110 0.0757539127 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005511_140 0.0776457227 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
5 Hb_009778_060 0.0837537141 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
6 Hb_012150_030 0.0838599784 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
7 Hb_000282_080 0.0843206115 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001227_090 0.0854815103 - - peroxiredoxin, putative [Ricinus communis]
9 Hb_003053_110 0.087871786 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
10 Hb_001226_140 0.0881055818 - - PREDICTED: protein phosphatase 2C 77-like [Jatropha curcas]
11 Hb_001766_050 0.0891338868 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29290 [Jatropha curcas]
12 Hb_002078_340 0.089888395 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
13 Hb_004644_030 0.0899051952 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
14 Hb_000023_360 0.0917205145 - - phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic [Jatropha curcas]
15 Hb_000107_430 0.0917222908 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
16 Hb_001214_050 0.092084121 - - PREDICTED: bifunctional monothiol glutaredoxin-S16, chloroplastic [Jatropha curcas]
17 Hb_158530_020 0.0943871794 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
18 Hb_001138_060 0.0950181378 - - hypothetical protein CICLE_v10028086mg [Citrus clementina]
19 Hb_000482_040 0.0972111214 - - Protein YME1, putative [Ricinus communis]
20 Hb_000340_150 0.0996677921 - - hypothetical protein JCGZ_21975 [Jatropha curcas]

Gene co-expression network

sample Hb_001195_450 Hb_001195_450 Hb_001723_060 Hb_001723_060 Hb_001195_450--Hb_001723_060 Hb_002762_110 Hb_002762_110 Hb_001195_450--Hb_002762_110 Hb_005511_140 Hb_005511_140 Hb_001195_450--Hb_005511_140 Hb_009778_060 Hb_009778_060 Hb_001195_450--Hb_009778_060 Hb_012150_030 Hb_012150_030 Hb_001195_450--Hb_012150_030 Hb_000282_080 Hb_000282_080 Hb_001195_450--Hb_000282_080 Hb_001723_060--Hb_002762_110 Hb_001723_060--Hb_009778_060 Hb_001138_060 Hb_001138_060 Hb_001723_060--Hb_001138_060 Hb_001214_050 Hb_001214_050 Hb_001723_060--Hb_001214_050 Hb_000482_040 Hb_000482_040 Hb_001723_060--Hb_000482_040 Hb_004644_030 Hb_004644_030 Hb_002762_110--Hb_004644_030 Hb_000622_290 Hb_000622_290 Hb_002762_110--Hb_000622_290 Hb_000107_430 Hb_000107_430 Hb_002762_110--Hb_000107_430 Hb_003053_110 Hb_003053_110 Hb_002762_110--Hb_003053_110 Hb_000077_150 Hb_000077_150 Hb_002762_110--Hb_000077_150 Hb_002762_110--Hb_001214_050 Hb_000340_040 Hb_000340_040 Hb_005511_140--Hb_000340_040 Hb_000023_360 Hb_000023_360 Hb_005511_140--Hb_000023_360 Hb_005511_140--Hb_000282_080 Hb_000169_020 Hb_000169_020 Hb_005511_140--Hb_000169_020 Hb_073973_090 Hb_073973_090 Hb_005511_140--Hb_073973_090 Hb_009778_060--Hb_000482_040 Hb_009778_060--Hb_001214_050 Hb_002374_250 Hb_002374_250 Hb_009778_060--Hb_002374_250 Hb_000635_060 Hb_000635_060 Hb_009778_060--Hb_000635_060 Hb_012150_030--Hb_003053_110 Hb_004452_120 Hb_004452_120 Hb_012150_030--Hb_004452_120 Hb_010863_050 Hb_010863_050 Hb_012150_030--Hb_010863_050 Hb_134849_010 Hb_134849_010 Hb_012150_030--Hb_134849_010 Hb_048093_010 Hb_048093_010 Hb_012150_030--Hb_048093_010 Hb_000941_100 Hb_000941_100 Hb_012150_030--Hb_000941_100 Hb_001314_080 Hb_001314_080 Hb_000282_080--Hb_001314_080 Hb_002758_010 Hb_002758_010 Hb_000282_080--Hb_002758_010 Hb_000023_260 Hb_000023_260 Hb_000282_080--Hb_000023_260 Hb_001080_090 Hb_001080_090 Hb_000282_080--Hb_001080_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.33305 1.63824 2.36479 2.23892 0.669101 1.22342
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.18471 2.02254 2.00364 1.61537 5.19571

CAGE analysis