Hb_001195_460

Information

Type -
Description -
Location Contig1195: 281563-284390
Sequence    

Annotation

kegg
ID rcu:RCOM_1593920
description hypothetical protein
nr
ID XP_012071816.1
description PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
swissprot
ID Q8H0Y1
description Outer envelope pore protein 24B, chloroplastic OS=Arabidopsis thaliana GN=OEP24B PE=2 SV=1
trembl
ID A0A067L1X1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04410 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05838: 281592-284474
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_460 0.0 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
2 Hb_001935_100 0.0887982541 - - structural molecule, putative [Ricinus communis]
3 Hb_107879_010 0.0909222483 - - phosphoglycerate mutase, putative [Ricinus communis]
4 Hb_004440_020 0.0916024058 - - AP-3 complex subunit sigma-1, putative [Ricinus communis]
5 Hb_000227_170 0.0919271484 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
6 Hb_029866_120 0.0958789715 - - hypothetical protein CICLE_v10006070mg [Citrus clementina]
7 Hb_000051_060 0.0972732755 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000487_260 0.0990929009 - - PREDICTED: protein Iojap, chloroplastic [Jatropha curcas]
9 Hb_019053_060 0.0995457353 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
10 Hb_005539_010 0.1029549466 - - PREDICTED: uncharacterized protein LOC105644585 [Jatropha curcas]
11 Hb_003029_070 0.1049584553 - - PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_001541_050 0.1054632572 - - PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]
13 Hb_000003_170 0.1060939779 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
14 Hb_007975_060 0.1063979841 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
15 Hb_000413_240 0.1064613782 - - PREDICTED: transcription factor ILR3-like isoform X2 [Jatropha curcas]
16 Hb_000137_040 0.1090457114 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
17 Hb_000173_250 0.1091764526 - - PREDICTED: ribonucleoside-diphosphate reductase small chain A [Jatropha curcas]
18 Hb_025194_060 0.1094302969 - - PREDICTED: photosynthetic NDH subunit of lumenal location 5, chloroplastic isoform X2 [Jatropha curcas]
19 Hb_005494_010 0.1118249179 - - catalytic, putative [Ricinus communis]
20 Hb_007192_070 0.1122337039 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_001195_460 Hb_001195_460 Hb_001935_100 Hb_001935_100 Hb_001195_460--Hb_001935_100 Hb_107879_010 Hb_107879_010 Hb_001195_460--Hb_107879_010 Hb_004440_020 Hb_004440_020 Hb_001195_460--Hb_004440_020 Hb_000227_170 Hb_000227_170 Hb_001195_460--Hb_000227_170 Hb_029866_120 Hb_029866_120 Hb_001195_460--Hb_029866_120 Hb_000051_060 Hb_000051_060 Hb_001195_460--Hb_000051_060 Hb_001935_100--Hb_000051_060 Hb_001935_100--Hb_000227_170 Hb_005539_010 Hb_005539_010 Hb_001935_100--Hb_005539_010 Hb_001410_070 Hb_001410_070 Hb_001935_100--Hb_001410_070 Hb_000796_160 Hb_000796_160 Hb_001935_100--Hb_000796_160 Hb_005946_040 Hb_005946_040 Hb_001935_100--Hb_005946_040 Hb_107879_010--Hb_000227_170 Hb_000270_680 Hb_000270_680 Hb_107879_010--Hb_000270_680 Hb_001472_100 Hb_001472_100 Hb_107879_010--Hb_001472_100 Hb_000579_120 Hb_000579_120 Hb_107879_010--Hb_000579_120 Hb_000110_310 Hb_000110_310 Hb_107879_010--Hb_000110_310 Hb_003513_010 Hb_003513_010 Hb_107879_010--Hb_003513_010 Hb_004440_020--Hb_107879_010 Hb_000690_160 Hb_000690_160 Hb_004440_020--Hb_000690_160 Hb_002876_220 Hb_002876_220 Hb_004440_020--Hb_002876_220 Hb_003077_020 Hb_003077_020 Hb_004440_020--Hb_003077_020 Hb_012022_150 Hb_012022_150 Hb_004440_020--Hb_012022_150 Hb_000025_780 Hb_000025_780 Hb_000227_170--Hb_000025_780 Hb_005494_010 Hb_005494_010 Hb_000227_170--Hb_005494_010 Hb_003029_070 Hb_003029_070 Hb_000227_170--Hb_003029_070 Hb_000304_070 Hb_000304_070 Hb_000227_170--Hb_000304_070 Hb_000487_260 Hb_000487_260 Hb_029866_120--Hb_000487_260 Hb_013405_020 Hb_013405_020 Hb_029866_120--Hb_013405_020 Hb_029866_120--Hb_003077_020 Hb_000413_240 Hb_000413_240 Hb_029866_120--Hb_000413_240 Hb_000137_040 Hb_000137_040 Hb_029866_120--Hb_000137_040 Hb_005162_110 Hb_005162_110 Hb_000051_060--Hb_005162_110 Hb_003752_070 Hb_003752_070 Hb_000051_060--Hb_003752_070 Hb_021650_010 Hb_021650_010 Hb_000051_060--Hb_021650_010 Hb_000051_060--Hb_002876_220 Hb_001232_150 Hb_001232_150 Hb_000051_060--Hb_001232_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.8753 16.1577 63.8933 36.2521 34.2457 22.9415
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.3126 55.099 24.4989 16.8352 63.6751

CAGE analysis