Hb_001195_480

Information

Type -
Description -
Location Contig1195: 302306-307174
Sequence    

Annotation

kegg
ID rcu:RCOM_1593880
description cop9 complex subunit, putative
nr
ID XP_002510359.1
description cop9 complex subunit, putative [Ricinus communis]
swissprot
ID Q8L5U0
description COP9 signalosome complex subunit 4 OS=Arabidopsis thaliana GN=CSN4 PE=1 SV=2
trembl
ID B9R7R6
description Cop9 complex subunit, putative OS=Ricinus communis GN=RCOM_1593880 PE=4 SV=1
Gene Ontology
ID GO:0000502
description cop9 signalosome complex subunit 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05840: 302348-307112 , PASA_asmbl_05841: 303405-303642
cDNA
(Sanger)
(ID:Location)		 021_M11r.ab1: 307923-312576 , 044_J11r.ab1: 307897-312596

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_480 0.0 - - cop9 complex subunit, putative [Ricinus communis]
2 Hb_001534_120 0.050157679 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
3 Hb_000656_240 0.0573177911 - - proteasome subunit alpha type, putative [Ricinus communis]
4 Hb_000815_320 0.0601699006 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
5 Hb_000529_030 0.0667904503 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_004453_170 0.0679486447 - - hypothetical protein POPTR_0018s01370g [Populus trichocarpa]
7 Hb_004096_090 0.069090846 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
8 Hb_000580_090 0.0697880967 - - PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]
9 Hb_002811_260 0.0719091305 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
10 Hb_003057_090 0.0723658756 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
11 Hb_004116_190 0.0724147725 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
12 Hb_000261_160 0.0725395666 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X2 [Jatropha curcas]
13 Hb_012286_030 0.0731739659 transcription factor TF Family: MED7 PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]
14 Hb_001662_070 0.0747488742 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
15 Hb_003018_010 0.0751992603 - - PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Jatropha curcas]
16 Hb_006059_050 0.0753543376 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
17 Hb_008554_060 0.0764041116 - - PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Jatropha curcas]
18 Hb_010222_020 0.0765471329 - - PREDICTED: uncharacterized protein LOC105647642 [Jatropha curcas]
19 Hb_002226_060 0.0765865243 - - PREDICTED: uncharacterized protein LOC105641377 [Jatropha curcas]
20 Hb_000362_200 0.077521991 - - exonuclease family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001195_480 Hb_001195_480 Hb_001534_120 Hb_001534_120 Hb_001195_480--Hb_001534_120 Hb_000656_240 Hb_000656_240 Hb_001195_480--Hb_000656_240 Hb_000815_320 Hb_000815_320 Hb_001195_480--Hb_000815_320 Hb_000529_030 Hb_000529_030 Hb_001195_480--Hb_000529_030 Hb_004453_170 Hb_004453_170 Hb_001195_480--Hb_004453_170 Hb_004096_090 Hb_004096_090 Hb_001195_480--Hb_004096_090 Hb_007477_070 Hb_007477_070 Hb_001534_120--Hb_007477_070 Hb_010921_010 Hb_010921_010 Hb_001534_120--Hb_010921_010 Hb_002534_150 Hb_002534_150 Hb_001534_120--Hb_002534_150 Hb_001512_060 Hb_001512_060 Hb_001534_120--Hb_001512_060 Hb_000362_200 Hb_000362_200 Hb_001534_120--Hb_000362_200 Hb_004116_190 Hb_004116_190 Hb_000656_240--Hb_004116_190 Hb_001504_110 Hb_001504_110 Hb_000656_240--Hb_001504_110 Hb_011512_070 Hb_011512_070 Hb_000656_240--Hb_011512_070 Hb_000580_090 Hb_000580_090 Hb_000656_240--Hb_000580_090 Hb_008554_060 Hb_008554_060 Hb_000656_240--Hb_008554_060 Hb_001821_010 Hb_001821_010 Hb_000815_320--Hb_001821_010 Hb_001662_070 Hb_001662_070 Hb_000815_320--Hb_001662_070 Hb_000815_320--Hb_000580_090 Hb_000815_320--Hb_004116_190 Hb_005054_060 Hb_005054_060 Hb_000815_320--Hb_005054_060 Hb_000236_390 Hb_000236_390 Hb_000529_030--Hb_000236_390 Hb_000529_030--Hb_011512_070 Hb_150651_040 Hb_150651_040 Hb_000529_030--Hb_150651_040 Hb_002226_060 Hb_002226_060 Hb_000529_030--Hb_002226_060 Hb_000529_030--Hb_000656_240 Hb_001832_060 Hb_001832_060 Hb_004453_170--Hb_001832_060 Hb_000462_130 Hb_000462_130 Hb_004453_170--Hb_000462_130 Hb_000260_550 Hb_000260_550 Hb_004453_170--Hb_000260_550 Hb_001123_130 Hb_001123_130 Hb_004453_170--Hb_001123_130 Hb_000527_060 Hb_000527_060 Hb_004453_170--Hb_000527_060 Hb_004116_060 Hb_004116_060 Hb_004096_090--Hb_004116_060 Hb_009694_010 Hb_009694_010 Hb_004096_090--Hb_009694_010 Hb_004096_090--Hb_005054_060 Hb_000633_020 Hb_000633_020 Hb_004096_090--Hb_000633_020 Hb_010222_020 Hb_010222_020 Hb_004096_090--Hb_010222_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.7541 6.24145 14.6554 10.3021 10.8615 10.4467
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.9694 22.5905 10.9005 8.03193 6.52437

CAGE analysis