Hb_001195_500

Information

Type transcription factor
Description TF Family: C2H2
Location Contig1195: 317708-320770
Sequence    

Annotation

kegg
ID rcu:RCOM_1593850
description nucleic acid binding protein, putative
nr
ID XP_012071807.1
description PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
swissprot
ID Q9LVQ7
description Protein indeterminate-domain 1 OS=Arabidopsis thaliana GN=IDD1 PE=1 SV=1
trembl
ID A0A067L2Z9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04404 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein nutcracker-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05844: 317779-320768
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_500 0.0 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
2 Hb_000007_160 0.1268371603 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
3 Hb_001377_500 0.1297903641 - - DOF AFFECTING GERMINATION 2 family protein [Populus trichocarpa]
4 Hb_001355_070 0.1335252192 - - P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative isoform 2 [Theobroma cacao]
5 Hb_001791_010 0.1389117587 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g63710 [Jatropha curcas]
6 Hb_001148_040 0.1497307192 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
7 Hb_004631_110 0.1501731524 - - ring finger protein, putative [Ricinus communis]
8 Hb_004032_250 0.1511635446 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002035_030 0.1544289846 - - hypothetical protein PRUPE_ppa003221mg [Prunus persica]
10 Hb_001699_050 0.1569880369 transcription factor TF Family: MYB hypothetical protein POPTR_0005s11410g [Populus trichocarpa]
11 Hb_000778_020 0.1576378111 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
12 Hb_158696_010 0.158880185 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
13 Hb_000429_110 0.1592821122 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2-like [Populus euphratica]
14 Hb_000840_070 0.1598144335 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
15 Hb_002928_180 0.1610452388 - - catalase CAT1 [Manihot esculenta]
16 Hb_019040_010 0.1618239046 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
17 Hb_000189_120 0.16280031 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like isoform X5 [Jatropha curcas]
18 Hb_002609_150 0.1698454304 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
19 Hb_008175_030 0.1718213454 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
20 Hb_001584_010 0.1722679918 - - kelch repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001195_500 Hb_001195_500 Hb_000007_160 Hb_000007_160 Hb_001195_500--Hb_000007_160 Hb_001377_500 Hb_001377_500 Hb_001195_500--Hb_001377_500 Hb_001355_070 Hb_001355_070 Hb_001195_500--Hb_001355_070 Hb_001791_010 Hb_001791_010 Hb_001195_500--Hb_001791_010 Hb_001148_040 Hb_001148_040 Hb_001195_500--Hb_001148_040 Hb_004631_110 Hb_004631_110 Hb_001195_500--Hb_004631_110 Hb_000007_160--Hb_001148_040 Hb_001699_050 Hb_001699_050 Hb_000007_160--Hb_001699_050 Hb_002609_150 Hb_002609_150 Hb_000007_160--Hb_002609_150 Hb_008175_030 Hb_008175_030 Hb_000007_160--Hb_008175_030 Hb_000778_020 Hb_000778_020 Hb_000007_160--Hb_000778_020 Hb_002035_030 Hb_002035_030 Hb_001377_500--Hb_002035_030 Hb_000000_140 Hb_000000_140 Hb_001377_500--Hb_000000_140 Hb_000608_020 Hb_000608_020 Hb_001377_500--Hb_000608_020 Hb_001377_500--Hb_002609_150 Hb_002272_140 Hb_002272_140 Hb_001377_500--Hb_002272_140 Hb_002928_180 Hb_002928_180 Hb_001355_070--Hb_002928_180 Hb_000429_110 Hb_000429_110 Hb_001355_070--Hb_000429_110 Hb_000172_050 Hb_000172_050 Hb_001355_070--Hb_000172_050 Hb_002662_090 Hb_002662_090 Hb_001355_070--Hb_002662_090 Hb_010174_190 Hb_010174_190 Hb_001355_070--Hb_010174_190 Hb_003371_210 Hb_003371_210 Hb_001791_010--Hb_003371_210 Hb_098160_010 Hb_098160_010 Hb_001791_010--Hb_098160_010 Hb_009510_050 Hb_009510_050 Hb_001791_010--Hb_009510_050 Hb_000808_160 Hb_000808_160 Hb_001791_010--Hb_000808_160 Hb_004032_250 Hb_004032_250 Hb_001791_010--Hb_004032_250 Hb_140848_010 Hb_140848_010 Hb_001148_040--Hb_140848_010 Hb_010381_110 Hb_010381_110 Hb_001148_040--Hb_010381_110 Hb_008406_020 Hb_008406_020 Hb_001148_040--Hb_008406_020 Hb_001148_040--Hb_002609_150 Hb_001148_040--Hb_000778_020 Hb_000840_070 Hb_000840_070 Hb_004631_110--Hb_000840_070 Hb_001195_350 Hb_001195_350 Hb_004631_110--Hb_001195_350 Hb_000465_260 Hb_000465_260 Hb_004631_110--Hb_000465_260 Hb_001818_060 Hb_001818_060 Hb_004631_110--Hb_001818_060 Hb_158696_010 Hb_158696_010 Hb_004631_110--Hb_158696_010 Hb_000059_130 Hb_000059_130 Hb_004631_110--Hb_000059_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.05488 18.8301 3.99901 9.20785 0.822058 0.613709
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.417922 0.837076 0.170731 8.5222 1.30066

CAGE analysis