Hb_001195_680

Information

Type -
Description -
Location Contig1195: 486212-497933
Sequence    

Annotation

kegg
ID pop:POPTR_0002s13420g
description POPTRDRAFT_816499; phospholipid/glycerol acyltransferase family protein
nr
ID XP_012071774.1
description PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 [Jatropha curcas]
swissprot
ID Q8L4Y2
description Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 OS=Arabidopsis thaliana GN=LPAT4 PE=2 SV=1
trembl
ID B2LWM4
description 1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Ricinus communis GN=LPAAT4 PE=2 SV=1
Gene Ontology
ID GO:0016746
description probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 025_M15.ab1: 497151-497904 , 040_I02.ab1: 497095-497904

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_680 0.0 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 [Jatropha curcas]
2 Hb_005843_150 0.1573999777 transcription factor TF Family: HSF PREDICTED: heat shock factor protein HSF24 [Jatropha curcas]
3 Hb_000497_180 0.1653619878 - - hypothetical protein POPTR_0001s12710g [Populus trichocarpa]
4 Hb_096224_040 0.1881317985 - - PREDICTED: probable nucleoredoxin 3 isoform X1 [Jatropha curcas]
5 Hb_000432_040 0.1971212421 - - PREDICTED: remorin-like [Jatropha curcas]
6 Hb_005843_100 0.1986020437 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39350-like [Jatropha curcas]
7 Hb_027506_020 0.2320224159 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
8 Hb_004705_140 0.2327561098 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105647306 [Jatropha curcas]
9 Hb_000638_210 0.2337560982 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
10 Hb_010921_030 0.2357010756 transcription factor TF Family: PHD PREDICTED: PHD finger protein At2g01810 [Jatropha curcas]
11 Hb_087596_010 0.2362656392 - - PREDICTED: disease resistance protein RPS4-like [Jatropha curcas]
12 Hb_013394_080 0.2370723052 - - PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D isoform X2 [Jatropha curcas]
13 Hb_126380_010 0.2376074295 desease resistance Gene Name: NB-ARC ATP binding protein, putative [Ricinus communis]
14 Hb_000009_580 0.2377323167 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
15 Hb_000732_250 0.2392766089 - - PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial-like [Populus euphratica]
16 Hb_005015_070 0.2393616066 - - PREDICTED: pentatricopeptide repeat-containing protein At4g39530 [Jatropha curcas]
17 Hb_001205_030 0.2397023853 transcription factor TF Family: zf-HD hypothetical protein POPTR_0007s12970g [Populus trichocarpa]
18 Hb_002097_200 0.2400774439 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
19 Hb_002026_060 0.2410132327 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]
20 Hb_022250_090 0.241452264 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Jatropha curcas]

Gene co-expression network

sample Hb_001195_680 Hb_001195_680 Hb_005843_150 Hb_005843_150 Hb_001195_680--Hb_005843_150 Hb_000497_180 Hb_000497_180 Hb_001195_680--Hb_000497_180 Hb_096224_040 Hb_096224_040 Hb_001195_680--Hb_096224_040 Hb_000432_040 Hb_000432_040 Hb_001195_680--Hb_000432_040 Hb_005843_100 Hb_005843_100 Hb_001195_680--Hb_005843_100 Hb_027506_020 Hb_027506_020 Hb_001195_680--Hb_027506_020 Hb_005843_150--Hb_000497_180 Hb_005843_150--Hb_005843_100 Hb_005843_150--Hb_096224_040 Hb_000237_080 Hb_000237_080 Hb_005843_150--Hb_000237_080 Hb_002813_050 Hb_002813_050 Hb_005843_150--Hb_002813_050 Hb_001318_030 Hb_001318_030 Hb_005843_150--Hb_001318_030 Hb_000497_180--Hb_000237_080 Hb_000497_180--Hb_002813_050 Hb_000497_180--Hb_005843_100 Hb_000703_240 Hb_000703_240 Hb_000497_180--Hb_000703_240 Hb_000497_180--Hb_096224_040 Hb_096224_040--Hb_005843_100 Hb_096224_040--Hb_027506_020 Hb_001141_390 Hb_001141_390 Hb_096224_040--Hb_001141_390 Hb_096224_040--Hb_002813_050 Hb_000665_010 Hb_000665_010 Hb_096224_040--Hb_000665_010 Hb_028487_020 Hb_028487_020 Hb_000432_040--Hb_028487_020 Hb_001564_080 Hb_001564_080 Hb_000432_040--Hb_001564_080 Hb_002097_200 Hb_002097_200 Hb_000432_040--Hb_002097_200 Hb_006582_020 Hb_006582_020 Hb_000432_040--Hb_006582_020 Hb_115241_010 Hb_115241_010 Hb_000432_040--Hb_115241_010 Hb_000451_070 Hb_000451_070 Hb_000432_040--Hb_000451_070 Hb_005843_100--Hb_002813_050 Hb_005843_100--Hb_001318_030 Hb_012395_220 Hb_012395_220 Hb_005843_100--Hb_012395_220 Hb_002374_310 Hb_002374_310 Hb_005843_100--Hb_002374_310 Hb_001828_130 Hb_001828_130 Hb_027506_020--Hb_001828_130 Hb_003752_100 Hb_003752_100 Hb_027506_020--Hb_003752_100 Hb_000140_070 Hb_000140_070 Hb_027506_020--Hb_000140_070 Hb_076693_020 Hb_076693_020 Hb_027506_020--Hb_076693_020 Hb_004785_060 Hb_004785_060 Hb_027506_020--Hb_004785_060 Hb_012807_050 Hb_012807_050 Hb_027506_020--Hb_012807_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0596765 0.571212 0.00622969 0.0301603 0.191959 0.0853601
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.126818 0.27086 0.325964 0.135888 0.0302863

CAGE analysis