Hb_001195_690

Information

Type -
Description -
Location Contig1195: 500940-501812
Sequence    

Annotation

kegg
ID pop:POPTR_0002s13410g
description POPTRDRAFT_551914; zinc finger family protein
nr
ID XP_012071773.1
description PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
swissprot
ID Q09463
description RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1
trembl
ID A0A067L1U8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04385 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase rnf185 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05872: 500165-501938
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_690 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
2 Hb_004324_310 0.0644280282 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003052_100 0.065282031 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_003994_180 0.0767142958 - - PREDICTED: probable mitochondrial adenine nucleotide transporter BTL1 [Jatropha curcas]
5 Hb_158092_070 0.0793993584 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
6 Hb_021254_030 0.080143072 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
7 Hb_004657_020 0.0814972048 - - rer1 protein, putative [Ricinus communis]
8 Hb_001138_050 0.082711834 - - hypothetical protein JCGZ_15696 [Jatropha curcas]
9 Hb_000500_130 0.0843534639 - - small GTPase [Hevea brasiliensis]
10 Hb_002030_040 0.084470011 - - hypothetical protein JCGZ_18677 [Jatropha curcas]
11 Hb_004812_010 0.0862426889 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD6 [Jatropha curcas]
12 Hb_020178_070 0.0879645502 - - Protein Z, putative [Ricinus communis]
13 Hb_022250_040 0.0889563668 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
14 Hb_159558_030 0.0890929096 - - ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]
15 Hb_061802_020 0.0896488037 - - zinc finger family protein [Populus trichocarpa]
16 Hb_021650_030 0.0902889169 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
17 Hb_001671_080 0.0910792729 - - amino acid binding protein, putative [Ricinus communis]
18 Hb_001135_050 0.0923776171 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
19 Hb_004221_010 0.092441723 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
20 Hb_002078_450 0.0927099149 - - nuclear transport factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001195_690 Hb_001195_690 Hb_004324_310 Hb_004324_310 Hb_001195_690--Hb_004324_310 Hb_003052_100 Hb_003052_100 Hb_001195_690--Hb_003052_100 Hb_003994_180 Hb_003994_180 Hb_001195_690--Hb_003994_180 Hb_158092_070 Hb_158092_070 Hb_001195_690--Hb_158092_070 Hb_021254_030 Hb_021254_030 Hb_001195_690--Hb_021254_030 Hb_004657_020 Hb_004657_020 Hb_001195_690--Hb_004657_020 Hb_011689_080 Hb_011689_080 Hb_004324_310--Hb_011689_080 Hb_002078_150 Hb_002078_150 Hb_004324_310--Hb_002078_150 Hb_002774_060 Hb_002774_060 Hb_004324_310--Hb_002774_060 Hb_002105_090 Hb_002105_090 Hb_004324_310--Hb_002105_090 Hb_001377_290 Hb_001377_290 Hb_004324_310--Hb_001377_290 Hb_003052_100--Hb_158092_070 Hb_002078_450 Hb_002078_450 Hb_003052_100--Hb_002078_450 Hb_003052_100--Hb_004657_020 Hb_071736_020 Hb_071736_020 Hb_003052_100--Hb_071736_020 Hb_001671_080 Hb_001671_080 Hb_003052_100--Hb_001671_080 Hb_023226_040 Hb_023226_040 Hb_003994_180--Hb_023226_040 Hb_000808_040 Hb_000808_040 Hb_003994_180--Hb_000808_040 Hb_003994_180--Hb_004324_310 Hb_001138_050 Hb_001138_050 Hb_003994_180--Hb_001138_050 Hb_159558_030 Hb_159558_030 Hb_003994_180--Hb_159558_030 Hb_133271_020 Hb_133271_020 Hb_158092_070--Hb_133271_020 Hb_004221_010 Hb_004221_010 Hb_158092_070--Hb_004221_010 Hb_003392_040 Hb_003392_040 Hb_158092_070--Hb_003392_040 Hb_001030_120 Hb_001030_120 Hb_158092_070--Hb_001030_120 Hb_000975_290 Hb_000975_290 Hb_158092_070--Hb_000975_290 Hb_004109_200 Hb_004109_200 Hb_021254_030--Hb_004109_200 Hb_010381_070 Hb_010381_070 Hb_021254_030--Hb_010381_070 Hb_000139_410 Hb_000139_410 Hb_021254_030--Hb_000139_410 Hb_009615_150 Hb_009615_150 Hb_021254_030--Hb_009615_150 Hb_021254_030--Hb_003994_180 Hb_004657_020--Hb_002078_450 Hb_000371_080 Hb_000371_080 Hb_004657_020--Hb_000371_080 Hb_009711_030 Hb_009711_030 Hb_004657_020--Hb_009711_030 Hb_005686_110 Hb_005686_110 Hb_004657_020--Hb_005686_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
77.6174 32.9188 19.7132 32.92 52.4356 71.8742
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
113.288 70.5796 70.2211 24.6803 10.8788

CAGE analysis