Hb_001195_710

Information

Type -
Description -
Location Contig1195: 509159-510244
Sequence    

Annotation

kegg
ID pop:POPTR_0014s03980g
description glycosyl transferase family 8 family protein
nr
ID ACW83060.1
description glycosyltransferase family GT8 protein [Populus deltoides]
swissprot
ID Q9LN68
description Probable galacturonosyltransferase-like 1 OS=Arabidopsis thaliana GN=GATL1 PE=2 SV=1
trembl
ID D0ECQ6
description Hexosyltransferase OS=Populus deltoides GN=GATL1.1 PE=2 SV=1
Gene Ontology
ID GO:0047262
description probable galacturonosyltransferase-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05873: 509532-510682
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_710 0.0 - - glycosyltransferase family GT8 protein [Populus deltoides]
2 Hb_001096_010 0.0782361517 - - PREDICTED: uncharacterized protein LOC105650448 [Jatropha curcas]
3 Hb_000368_050 0.0884562259 - - beta-galactosidase, putative [Ricinus communis]
4 Hb_001511_220 0.0892589726 - - hypothetical protein POPTR_0008s06990g [Populus trichocarpa]
5 Hb_002171_050 0.0902028646 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Populus euphratica]
6 Hb_182869_010 0.0933353929 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
7 Hb_000449_070 0.0956886823 - - unnamed protein product [Vitis vinifera]
8 Hb_002499_030 0.0960775381 - - receptor-kinase, putative [Ricinus communis]
9 Hb_009476_080 0.1004582954 - - BnaA03g18920D [Brassica napus]
10 Hb_011224_070 0.1010463603 - - PREDICTED: solute carrier family 35 member E3 [Jatropha curcas]
11 Hb_001269_160 0.1015748615 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006386_010 0.1025370862 - - PREDICTED: polygalacturonase QRT3 [Jatropha curcas]
13 Hb_001268_290 0.1037595787 - - PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
14 Hb_002759_030 0.1056078412 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
15 Hb_010142_060 0.1089969537 - - Blue copper protein precursor, putative [Ricinus communis]
16 Hb_004225_120 0.1109232291 - - PREDICTED: uncharacterized protein LOC105628059 [Jatropha curcas]
17 Hb_001104_060 0.1138701156 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
18 Hb_003747_160 0.113911072 - - conserved hypothetical protein [Ricinus communis]
19 Hb_047612_010 0.1147985174 - - glutamine amidotransferase class-I domain-containing family protein [Populus trichocarpa]
20 Hb_064047_020 0.1156198406 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]

Gene co-expression network

sample Hb_001195_710 Hb_001195_710 Hb_001096_010 Hb_001096_010 Hb_001195_710--Hb_001096_010 Hb_000368_050 Hb_000368_050 Hb_001195_710--Hb_000368_050 Hb_001511_220 Hb_001511_220 Hb_001195_710--Hb_001511_220 Hb_002171_050 Hb_002171_050 Hb_001195_710--Hb_002171_050 Hb_182869_010 Hb_182869_010 Hb_001195_710--Hb_182869_010 Hb_000449_070 Hb_000449_070 Hb_001195_710--Hb_000449_070 Hb_002499_030 Hb_002499_030 Hb_001096_010--Hb_002499_030 Hb_011224_070 Hb_011224_070 Hb_001096_010--Hb_011224_070 Hb_005614_020 Hb_005614_020 Hb_001096_010--Hb_005614_020 Hb_003747_160 Hb_003747_160 Hb_001096_010--Hb_003747_160 Hb_001096_010--Hb_001511_220 Hb_000368_050--Hb_182869_010 Hb_000676_230 Hb_000676_230 Hb_000368_050--Hb_000676_230 Hb_001534_140 Hb_001534_140 Hb_000368_050--Hb_001534_140 Hb_047612_010 Hb_047612_010 Hb_000368_050--Hb_047612_010 Hb_009252_070 Hb_009252_070 Hb_000368_050--Hb_009252_070 Hb_010142_060 Hb_010142_060 Hb_000368_050--Hb_010142_060 Hb_001511_220--Hb_011224_070 Hb_001511_220--Hb_003747_160 Hb_009476_080 Hb_009476_080 Hb_001511_220--Hb_009476_080 Hb_004650_120 Hb_004650_120 Hb_001511_220--Hb_004650_120 Hb_002835_360 Hb_002835_360 Hb_001511_220--Hb_002835_360 Hb_001511_220--Hb_002499_030 Hb_002171_050--Hb_000449_070 Hb_004625_020 Hb_004625_020 Hb_002171_050--Hb_004625_020 Hb_004917_020 Hb_004917_020 Hb_002171_050--Hb_004917_020 Hb_002171_050--Hb_005614_020 Hb_133492_010 Hb_133492_010 Hb_002171_050--Hb_133492_010 Hb_002171_050--Hb_002499_030 Hb_182869_010--Hb_001511_220 Hb_002925_060 Hb_002925_060 Hb_182869_010--Hb_002925_060 Hb_000620_050 Hb_000620_050 Hb_182869_010--Hb_000620_050 Hb_005711_030 Hb_005711_030 Hb_182869_010--Hb_005711_030 Hb_003058_240 Hb_003058_240 Hb_182869_010--Hb_003058_240 Hb_000020_140 Hb_000020_140 Hb_000449_070--Hb_000020_140 Hb_004020_030 Hb_004020_030 Hb_000449_070--Hb_004020_030 Hb_002997_150 Hb_002997_150 Hb_000449_070--Hb_002997_150 Hb_071079_040 Hb_071079_040 Hb_000449_070--Hb_071079_040 Hb_000449_070--Hb_011224_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0800495 2.14815 4.11521 37.5706 0.0187539 0.0215545
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.183094 0.144013 0.06661 1.73416 16.9614

CAGE analysis