Hb_001195_740

Information

Type transcription factor
Description TF Family: LIM
Location Contig1195: 522065-529253
Sequence    

Annotation

kegg
ID pop:POPTR_0002s13380g
description POPTRDRAFT_798914; hypothetical protein
nr
ID XP_012071765.1
description PREDICTED: protein DA1 isoform X1 [Jatropha curcas]
swissprot
ID P0C7Q8
description Protein DA1 OS=Arabidopsis thaliana GN=DA1 PE=1 SV=1
trembl
ID A0A067L1U3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04380 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein da1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05877: 526228-527844
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_740 0.0 transcription factor TF Family: LIM PREDICTED: protein DA1 isoform X1 [Jatropha curcas]
2 Hb_001157_190 0.0831033489 - - PREDICTED: protein YLS3 [Jatropha curcas]
3 Hb_008143_060 0.0856663632 - - PREDICTED: putative hydrolase C777.06c isoform X2 [Jatropha curcas]
4 Hb_002918_120 0.0861156717 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_001832_140 0.0956384251 - - endomembrane protein 70 family protein [Medicago truncatula]
6 Hb_000696_250 0.1127274305 - - PREDICTED: patellin-6 [Jatropha curcas]
7 Hb_000696_030 0.1128195041 - - PREDICTED: uncharacterized protein LOC105647085 isoform X1 [Jatropha curcas]
8 Hb_021346_020 0.113992544 - - hypothetical protein JCGZ_26746 [Jatropha curcas]
9 Hb_015001_030 0.1158205956 - - inosine-uridine preferring nucleoside hydrolase family protein [Populus trichocarpa]
10 Hb_000941_010 0.1173173014 - - hypothetical protein RCOM_0504460 [Ricinus communis]
11 Hb_006711_040 0.1183258936 - - PREDICTED: probable protein ABIL5 [Jatropha curcas]
12 Hb_005731_070 0.1214400798 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004446_060 0.1231378687 - - neutral/alkaline invertase [Manihot esculenta]
14 Hb_001597_030 0.1237580685 - - PREDICTED: uncharacterized protein LOC104445128 isoform X1 [Eucalyptus grandis]
15 Hb_001638_150 0.1241086231 - - acyltransferase, putative [Ricinus communis]
16 Hb_005993_030 0.1292078216 - - putative senescence-associated protein SAG102 [Populus trichocarpa]
17 Hb_001437_260 0.1299334265 - - PREDICTED: protein FAM98B-like [Jatropha curcas]
18 Hb_001252_050 0.1313250055 - - Wall-associated receptor kinase-like 20 [Morus notabilis]
19 Hb_000834_220 0.1359018532 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
20 Hb_000714_060 0.1359256641 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 1-like [Populus euphratica]

Gene co-expression network

sample Hb_001195_740 Hb_001195_740 Hb_001157_190 Hb_001157_190 Hb_001195_740--Hb_001157_190 Hb_008143_060 Hb_008143_060 Hb_001195_740--Hb_008143_060 Hb_002918_120 Hb_002918_120 Hb_001195_740--Hb_002918_120 Hb_001832_140 Hb_001832_140 Hb_001195_740--Hb_001832_140 Hb_000696_250 Hb_000696_250 Hb_001195_740--Hb_000696_250 Hb_000696_030 Hb_000696_030 Hb_001195_740--Hb_000696_030 Hb_001157_190--Hb_000696_030 Hb_001157_190--Hb_002918_120 Hb_001597_030 Hb_001597_030 Hb_001157_190--Hb_001597_030 Hb_005731_070 Hb_005731_070 Hb_001157_190--Hb_005731_070 Hb_005839_030 Hb_005839_030 Hb_001157_190--Hb_005839_030 Hb_006711_040 Hb_006711_040 Hb_008143_060--Hb_006711_040 Hb_008143_060--Hb_001832_140 Hb_001252_050 Hb_001252_050 Hb_008143_060--Hb_001252_050 Hb_008143_060--Hb_000696_250 Hb_000465_130 Hb_000465_130 Hb_008143_060--Hb_000465_130 Hb_004446_060 Hb_004446_060 Hb_002918_120--Hb_004446_060 Hb_000834_220 Hb_000834_220 Hb_002918_120--Hb_000834_220 Hb_005144_060 Hb_005144_060 Hb_002918_120--Hb_005144_060 Hb_001437_260 Hb_001437_260 Hb_002918_120--Hb_001437_260 Hb_021346_020 Hb_021346_020 Hb_002918_120--Hb_021346_020 Hb_001832_140--Hb_000696_250 Hb_001832_140--Hb_006711_040 Hb_001832_140--Hb_001252_050 Hb_001832_140--Hb_000465_130 Hb_000018_120 Hb_000018_120 Hb_000696_250--Hb_000018_120 Hb_000696_250--Hb_001252_050 Hb_001349_020 Hb_001349_020 Hb_000696_250--Hb_001349_020 Hb_009767_030 Hb_009767_030 Hb_000696_250--Hb_009767_030 Hb_022092_050 Hb_022092_050 Hb_000696_250--Hb_022092_050 Hb_001776_070 Hb_001776_070 Hb_000696_030--Hb_001776_070 Hb_005679_110 Hb_005679_110 Hb_000696_030--Hb_005679_110 Hb_000696_030--Hb_005839_030 Hb_005144_080 Hb_005144_080 Hb_000696_030--Hb_005144_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.160037 0.855372 5.16462 4.34768 0.00816411 0.0824053
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0185125 0.0291341 0 3.96374 1.67038

CAGE analysis