Hb_001195_770

Information

Type -
Description -
Location Contig1195: 541978-552117
Sequence    

Annotation

kegg
ID rcu:RCOM_1593350
description Protein ariadne-1, putative
nr
ID XP_012071760.1
description PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
swissprot
ID Q84RR2
description Probable E3 ubiquitin-protein ligase ARI2 OS=Arabidopsis thaliana GN=ARI2 PE=2 SV=1
trembl
ID A0A067L1T7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04375 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring u-box superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05882: 542428-544138 , PASA_asmbl_05883: 544268-551010 , PASA_asmbl_05884: 551375-551859
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_770 0.0 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
2 Hb_008705_020 0.0470348219 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
3 Hb_003053_110 0.0560570049 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
4 Hb_000941_100 0.0638837933 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
5 Hb_000816_200 0.0688832009 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
6 Hb_006907_060 0.0727837818 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
7 Hb_002762_110 0.0753184986 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007441_310 0.076645506 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
9 Hb_000480_040 0.0781303898 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X2 [Jatropha curcas]
10 Hb_001438_010 0.078528016 - - PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
11 Hb_004644_030 0.079621748 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
12 Hb_000032_500 0.0803080466 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
13 Hb_000167_110 0.0812161188 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
14 Hb_012150_030 0.0848702076 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
15 Hb_029920_030 0.0859494936 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
16 Hb_048093_010 0.0868382292 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
17 Hb_000529_180 0.087097647 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
18 Hb_000107_430 0.0876050107 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
19 Hb_055690_010 0.0878122438 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
20 Hb_007741_110 0.0880842274 - - -

Gene co-expression network

sample Hb_001195_770 Hb_001195_770 Hb_008705_020 Hb_008705_020 Hb_001195_770--Hb_008705_020 Hb_003053_110 Hb_003053_110 Hb_001195_770--Hb_003053_110 Hb_000941_100 Hb_000941_100 Hb_001195_770--Hb_000941_100 Hb_000816_200 Hb_000816_200 Hb_001195_770--Hb_000816_200 Hb_006907_060 Hb_006907_060 Hb_001195_770--Hb_006907_060 Hb_002762_110 Hb_002762_110 Hb_001195_770--Hb_002762_110 Hb_008705_020--Hb_003053_110 Hb_030736_040 Hb_030736_040 Hb_008705_020--Hb_030736_040 Hb_000167_110 Hb_000167_110 Hb_008705_020--Hb_000167_110 Hb_008705_020--Hb_006907_060 Hb_008705_020--Hb_000941_100 Hb_012150_030 Hb_012150_030 Hb_003053_110--Hb_012150_030 Hb_003053_110--Hb_000941_100 Hb_007741_110 Hb_007741_110 Hb_003053_110--Hb_007741_110 Hb_134849_010 Hb_134849_010 Hb_003053_110--Hb_134849_010 Hb_048093_010 Hb_048093_010 Hb_000941_100--Hb_048093_010 Hb_000941_100--Hb_012150_030 Hb_000941_100--Hb_006907_060 Hb_005539_010 Hb_005539_010 Hb_000941_100--Hb_005539_010 Hb_016461_030 Hb_016461_030 Hb_000816_200--Hb_016461_030 Hb_003124_120 Hb_003124_120 Hb_000816_200--Hb_003124_120 Hb_029920_030 Hb_029920_030 Hb_000816_200--Hb_029920_030 Hb_000189_450 Hb_000189_450 Hb_000816_200--Hb_000189_450 Hb_007441_310 Hb_007441_310 Hb_000816_200--Hb_007441_310 Hb_002631_240 Hb_002631_240 Hb_006907_060--Hb_002631_240 Hb_006907_060--Hb_003053_110 Hb_073973_090 Hb_073973_090 Hb_006907_060--Hb_073973_090 Hb_004644_030 Hb_004644_030 Hb_002762_110--Hb_004644_030 Hb_000622_290 Hb_000622_290 Hb_002762_110--Hb_000622_290 Hb_000107_430 Hb_000107_430 Hb_002762_110--Hb_000107_430 Hb_002762_110--Hb_003053_110 Hb_000077_150 Hb_000077_150 Hb_002762_110--Hb_000077_150 Hb_001214_050 Hb_001214_050 Hb_002762_110--Hb_001214_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.93777 2.34639 6.5436 4.8604 2.05991 1.97832
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.8091 3.24009 3.11737 3.41228 11.0039

CAGE analysis