Hb_001196_060

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig1196: 50694-56270
Sequence    

Annotation

kegg
ID rcu:RCOM_0898870
description Disease resistance protein RFL1, putative (EC:3.1.3.16)
nr
ID XP_012073245.1
description PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
swissprot
ID Q8RXS5
description Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2
trembl
ID A0A067KLL6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06192 PE=4 SV=1
Gene Ontology
ID GO:0005515
description probable disease resistance protein at5g63020

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05897: 40106-52933 , PASA_asmbl_05899: 52043-52252 , PASA_asmbl_05900: 53396-53967 , PASA_asmbl_05901: 54024-54342 , PASA_asmbl_05904: 55791-56246
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001196_060 0.0 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
2 Hb_002188_090 0.0663437037 - - PREDICTED: pre-mRNA-processing protein 40A isoform X1 [Jatropha curcas]
3 Hb_000250_070 0.082220667 - - PREDICTED: E3 ubiquitin-protein ligase listerin [Jatropha curcas]
4 Hb_004970_160 0.0908935438 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]
5 Hb_000487_220 0.0922443461 - - eukaryotic translation elongation factor, putative [Ricinus communis]
6 Hb_000475_020 0.0926028006 - - PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]
7 Hb_031069_020 0.0934903733 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 3-like [Jatropha curcas]
8 Hb_005462_020 0.0944005473 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
9 Hb_000504_150 0.0945314413 - - PREDICTED: nuclear pore complex protein GP210 [Jatropha curcas]
10 Hb_078477_040 0.0948725469 - - nuclear movement protein nudc, putative [Ricinus communis]
11 Hb_006882_010 0.0952855046 - - PREDICTED: dnaJ homolog subfamily B member 1 [Cucumis sativus]
12 Hb_003436_050 0.0957215548 - - arf gtpase-activating protein, putative [Ricinus communis]
13 Hb_000640_200 0.0965137181 - - hypothetical protein RCOM_1346600 [Ricinus communis]
14 Hb_001811_120 0.0982798182 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
15 Hb_006829_090 0.0985778365 - - PREDICTED: protein MOS2 [Jatropha curcas]
16 Hb_002471_210 0.0998938027 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
17 Hb_000347_570 0.101348443 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
18 Hb_007849_020 0.1032508149 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
19 Hb_003029_130 0.103311204 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
20 Hb_007904_180 0.1055302918 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Jatropha curcas]

Gene co-expression network

sample Hb_001196_060 Hb_001196_060 Hb_002188_090 Hb_002188_090 Hb_001196_060--Hb_002188_090 Hb_000250_070 Hb_000250_070 Hb_001196_060--Hb_000250_070 Hb_004970_160 Hb_004970_160 Hb_001196_060--Hb_004970_160 Hb_000487_220 Hb_000487_220 Hb_001196_060--Hb_000487_220 Hb_000475_020 Hb_000475_020 Hb_001196_060--Hb_000475_020 Hb_031069_020 Hb_031069_020 Hb_001196_060--Hb_031069_020 Hb_001522_010 Hb_001522_010 Hb_002188_090--Hb_001522_010 Hb_005462_020 Hb_005462_020 Hb_002188_090--Hb_005462_020 Hb_002188_090--Hb_004970_160 Hb_000363_380 Hb_000363_380 Hb_002188_090--Hb_000363_380 Hb_000504_150 Hb_000504_150 Hb_002188_090--Hb_000504_150 Hb_007849_020 Hb_007849_020 Hb_000250_070--Hb_007849_020 Hb_000250_070--Hb_000475_020 Hb_002471_210 Hb_002471_210 Hb_000250_070--Hb_002471_210 Hb_002291_070 Hb_002291_070 Hb_000250_070--Hb_002291_070 Hb_006816_300 Hb_006816_300 Hb_000250_070--Hb_006816_300 Hb_001811_120 Hb_001811_120 Hb_000250_070--Hb_001811_120 Hb_000120_620 Hb_000120_620 Hb_004970_160--Hb_000120_620 Hb_004899_070 Hb_004899_070 Hb_004970_160--Hb_004899_070 Hb_004970_160--Hb_005462_020 Hb_001028_070 Hb_001028_070 Hb_004970_160--Hb_001028_070 Hb_000594_020 Hb_000594_020 Hb_004970_160--Hb_000594_020 Hb_000120_610 Hb_000120_610 Hb_004970_160--Hb_000120_610 Hb_003029_130 Hb_003029_130 Hb_000487_220--Hb_003029_130 Hb_000487_220--Hb_000475_020 Hb_000487_220--Hb_000504_150 Hb_000487_220--Hb_001811_120 Hb_000487_220--Hb_004970_160 Hb_000209_070 Hb_000209_070 Hb_000487_220--Hb_000209_070 Hb_000475_020--Hb_001811_120 Hb_000475_020--Hb_002471_210 Hb_000475_020--Hb_007849_020 Hb_000475_020--Hb_002291_070 Hb_147737_010 Hb_147737_010 Hb_000475_020--Hb_147737_010 Hb_078477_040 Hb_078477_040 Hb_031069_020--Hb_078477_040 Hb_001901_080 Hb_001901_080 Hb_031069_020--Hb_001901_080 Hb_001731_020 Hb_001731_020 Hb_031069_020--Hb_001731_020 Hb_000640_200 Hb_000640_200 Hb_031069_020--Hb_000640_200 Hb_006588_050 Hb_006588_050 Hb_031069_020--Hb_006588_050 Hb_006501_020 Hb_006501_020 Hb_031069_020--Hb_006501_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.35232 1.95182 0.681855 0.971334 4.12501 3.96394
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.614352 0.550908 0.645365 1.46252 1.58363

CAGE analysis