Hb_001196_070

Information

Type -
Description -
Location Contig1196: 66750-72198
Sequence    

Annotation

kegg
ID rcu:RCOM_0546040
description nucleolar protein nop56, putative
nr
ID XP_002533223.1
description nucleolar protein nop56, putative [Ricinus communis]
swissprot
ID Q9MAB3
description Probable nucleolar protein 5-2 OS=Arabidopsis thaliana GN=NOP5-2 PE=2 SV=1
trembl
ID B9T4Q4
description Nucleolar protein nop56, putative OS=Ricinus communis GN=RCOM_0546040 PE=4 SV=1
Gene Ontology
ID GO:0019013
description probable nucleolar protein 5-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05905: 68420-70212 , PASA_asmbl_05906: 70215-70682
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001196_070 0.0 - - nucleolar protein nop56, putative [Ricinus communis]
2 Hb_005129_050 0.0737428891 - - PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Jatropha curcas]
3 Hb_001278_060 0.0794474796 - - nucleotide binding protein, putative [Ricinus communis]
4 Hb_001433_190 0.0808204248 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
5 Hb_125092_020 0.0838407057 - - PREDICTED: nucleolin 1-like isoform X1 [Jatropha curcas]
6 Hb_000120_510 0.0850269604 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
7 Hb_001301_210 0.0902376902 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 32 [Jatropha curcas]
8 Hb_000331_190 0.0914025587 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
9 Hb_002883_010 0.0958547145 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
10 Hb_007668_020 0.0960127208 - - PREDICTED: uncharacterized protein LOC105631102 [Jatropha curcas]
11 Hb_000213_070 0.0980621973 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X2 [Jatropha curcas]
12 Hb_005214_060 0.0985309787 - - catalytic, putative [Ricinus communis]
13 Hb_024990_010 0.0998378109 - - PREDICTED: la protein 1 [Jatropha curcas]
14 Hb_002652_040 0.1007793789 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
15 Hb_000230_370 0.1021679393 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
16 Hb_002675_060 0.1023562711 - - PREDICTED: uncharacterized protein LOC105634954 isoform X2 [Jatropha curcas]
17 Hb_006829_090 0.1043632735 - - PREDICTED: protein MOS2 [Jatropha curcas]
18 Hb_006002_030 0.1057096605 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
19 Hb_000035_400 0.1073231188 - - PREDICTED: lariat debranching enzyme-like [Citrus sinensis]
20 Hb_000531_090 0.108065118 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]

Gene co-expression network

sample Hb_001196_070 Hb_001196_070 Hb_005129_050 Hb_005129_050 Hb_001196_070--Hb_005129_050 Hb_001278_060 Hb_001278_060 Hb_001196_070--Hb_001278_060 Hb_001433_190 Hb_001433_190 Hb_001196_070--Hb_001433_190 Hb_125092_020 Hb_125092_020 Hb_001196_070--Hb_125092_020 Hb_000120_510 Hb_000120_510 Hb_001196_070--Hb_000120_510 Hb_001301_210 Hb_001301_210 Hb_001196_070--Hb_001301_210 Hb_005129_050--Hb_001301_210 Hb_005129_050--Hb_001278_060 Hb_002883_010 Hb_002883_010 Hb_005129_050--Hb_002883_010 Hb_005129_050--Hb_001433_190 Hb_007668_020 Hb_007668_020 Hb_005129_050--Hb_007668_020 Hb_006002_030 Hb_006002_030 Hb_001278_060--Hb_006002_030 Hb_001278_060--Hb_007668_020 Hb_000213_070 Hb_000213_070 Hb_001278_060--Hb_000213_070 Hb_001278_060--Hb_001433_190 Hb_078477_040 Hb_078477_040 Hb_001278_060--Hb_078477_040 Hb_001433_190--Hb_002883_010 Hb_007849_020 Hb_007849_020 Hb_001433_190--Hb_007849_020 Hb_001433_190--Hb_006002_030 Hb_000531_090 Hb_000531_090 Hb_125092_020--Hb_000531_090 Hb_000331_190 Hb_000331_190 Hb_125092_020--Hb_000331_190 Hb_002652_040 Hb_002652_040 Hb_125092_020--Hb_002652_040 Hb_000035_040 Hb_000035_040 Hb_125092_020--Hb_000035_040 Hb_024990_010 Hb_024990_010 Hb_125092_020--Hb_024990_010 Hb_000567_010 Hb_000567_010 Hb_125092_020--Hb_000567_010 Hb_001396_290 Hb_001396_290 Hb_000120_510--Hb_001396_290 Hb_000120_510--Hb_001301_210 Hb_006829_090 Hb_006829_090 Hb_000120_510--Hb_006829_090 Hb_000120_510--Hb_000331_190 Hb_000343_210 Hb_000343_210 Hb_000120_510--Hb_000343_210 Hb_000244_240 Hb_000244_240 Hb_000120_510--Hb_000244_240 Hb_001301_210--Hb_002883_010 Hb_001301_210--Hb_000244_240 Hb_000230_370 Hb_000230_370 Hb_001301_210--Hb_000230_370 Hb_001301_210--Hb_001396_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.1383 12.9983 12.9692 6.40004 44.2694 51.3397
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6759 9.75432 9.05281 21.5854 10.2969

CAGE analysis