Hb_001196_080

Information

Type -
Description -
Location Contig1196: 73248-74871
Sequence    

Annotation

kegg
ID rcu:RCOM_0546030
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.18)
nr
ID XP_012075115.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
swissprot
ID Q9FLV4
description G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 OS=Arabidopsis thaliana GN=At5g24080 PE=2 SV=1
trembl
ID A0A067KSW1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10349 PE=3 SV=1
Gene Ontology
ID GO:0004672
description g-type lectin s-receptor-like serine threonine-protein kinase at1g34300

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05910: 74289-74737
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001196_080 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
2 Hb_000692_120 0.0825074622 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
3 Hb_000671_060 0.1102640994 - - protein binding protein, putative [Ricinus communis]
4 Hb_069841_010 0.1152671439 - - resistance protein [Quercus suber]
5 Hb_003090_150 0.1373079533 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]
6 Hb_005054_310 0.1389199513 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
7 Hb_002311_140 0.1399474609 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 15-like [Jatropha curcas]
8 Hb_005568_130 0.1425698354 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
9 Hb_012305_140 0.1444711151 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X1 [Jatropha curcas]
10 Hb_000163_230 0.1458840927 - - Phytochrome A-associated F-box protein, putative [Ricinus communis]
11 Hb_002609_190 0.146246461 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
12 Hb_091226_010 0.1470330056 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA isoform X1 [Jatropha curcas]
13 Hb_000058_050 0.1488564739 - - PREDICTED: uncharacterized protein LOC105640877 [Jatropha curcas]
14 Hb_000056_300 0.1510377072 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
15 Hb_005394_010 0.1523078551 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
16 Hb_000890_010 0.1524621141 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001079_030 0.1559322048 - - PREDICTED: splicing factor U2af small subunit B-like [Jatropha curcas]
18 Hb_003228_030 0.1565468623 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
19 Hb_003078_030 0.1594750085 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
20 Hb_128695_030 0.1598400469 - - heat shock protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001196_080 Hb_001196_080 Hb_000692_120 Hb_000692_120 Hb_001196_080--Hb_000692_120 Hb_000671_060 Hb_000671_060 Hb_001196_080--Hb_000671_060 Hb_069841_010 Hb_069841_010 Hb_001196_080--Hb_069841_010 Hb_003090_150 Hb_003090_150 Hb_001196_080--Hb_003090_150 Hb_005054_310 Hb_005054_310 Hb_001196_080--Hb_005054_310 Hb_002311_140 Hb_002311_140 Hb_001196_080--Hb_002311_140 Hb_000692_120--Hb_005054_310 Hb_005000_140 Hb_005000_140 Hb_000692_120--Hb_005000_140 Hb_003228_030 Hb_003228_030 Hb_000692_120--Hb_003228_030 Hb_000890_010 Hb_000890_010 Hb_000692_120--Hb_000890_010 Hb_000836_370 Hb_000836_370 Hb_000692_120--Hb_000836_370 Hb_000671_060--Hb_003090_150 Hb_000163_230 Hb_000163_230 Hb_000671_060--Hb_000163_230 Hb_000671_060--Hb_002311_140 Hb_012305_140 Hb_012305_140 Hb_000671_060--Hb_012305_140 Hb_000261_280 Hb_000261_280 Hb_000671_060--Hb_000261_280 Hb_000732_070 Hb_000732_070 Hb_069841_010--Hb_000732_070 Hb_000997_150 Hb_000997_150 Hb_069841_010--Hb_000997_150 Hb_000988_030 Hb_000988_030 Hb_069841_010--Hb_000988_030 Hb_069841_010--Hb_000671_060 Hb_001079_030 Hb_001079_030 Hb_069841_010--Hb_001079_030 Hb_001571_030 Hb_001571_030 Hb_003090_150--Hb_001571_030 Hb_002030_110 Hb_002030_110 Hb_003090_150--Hb_002030_110 Hb_001894_160 Hb_001894_160 Hb_003090_150--Hb_001894_160 Hb_011671_110 Hb_011671_110 Hb_003090_150--Hb_011671_110 Hb_033930_010 Hb_033930_010 Hb_003090_150--Hb_033930_010 Hb_005054_310--Hb_000836_370 Hb_005054_310--Hb_003228_030 Hb_000056_300 Hb_000056_300 Hb_005054_310--Hb_000056_300 Hb_000227_310 Hb_000227_310 Hb_005054_310--Hb_000227_310 Hb_128695_030 Hb_128695_030 Hb_005054_310--Hb_128695_030 Hb_001484_100 Hb_001484_100 Hb_005054_310--Hb_001484_100 Hb_085364_010 Hb_085364_010 Hb_002311_140--Hb_085364_010 Hb_000803_180 Hb_000803_180 Hb_002311_140--Hb_000803_180 Hb_002311_140--Hb_000261_280 Hb_003078_030 Hb_003078_030 Hb_002311_140--Hb_003078_030 Hb_002311_140--Hb_000163_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.47034 10.2186 7.58162 3.31234 4.3213 2.08357
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.62543 0.645729 0.401037 1.44036 1.46614

CAGE analysis