Hb_001198_030

Information

Type -
Description -
Location Contig1198: 20286-22193
Sequence    

Annotation

kegg
ID pop:POPTR_0003s01110g
description hypothetical protein
nr
ID XP_002303162.2
description hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
swissprot
ID Q9C958
description Serine/threonine-protein kinase SRK2B OS=Arabidopsis thaliana GN=SRK2B PE=1 SV=1
trembl
ID B9GZG8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s01110g PE=4 SV=2
Gene Ontology
ID GO:0005829
description snf1-related protein kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001198_030 0.0 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
2 Hb_001349_010 0.1121353209 - - -
3 Hb_004297_040 0.1153308232 - - acyl CoA reductase [Hevea brasiliensis]
4 Hb_001266_050 0.1158627054 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like isoform X2 [Elaeis guineensis]
5 Hb_010166_020 0.1189435313 transcription factor TF Family: NF-YC ccaat-binding transcription factor, putative [Ricinus communis]
6 Hb_000143_050 0.1215468043 - - PREDICTED: MFP1 attachment factor 1-like [Jatropha curcas]
7 Hb_001621_180 0.12599454 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Jatropha curcas]
8 Hb_005615_070 0.1271737826 - - Rab7 [Hevea brasiliensis]
9 Hb_081245_010 0.1285787529 - - Caffeic acid 3-O-methyltransferase [Morus notabilis]
10 Hb_001252_140 0.133302387 - - catalytic, putative [Ricinus communis]
11 Hb_010362_020 0.1360098562 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 38-like [Jatropha curcas]
12 Hb_002492_020 0.1389572321 - - PREDICTED: uncharacterized protein LOC104789613 [Camelina sativa]
13 Hb_000085_300 0.1427682338 - - -
14 Hb_001722_040 0.1456435754 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
15 Hb_000733_030 0.1464496596 - - PREDICTED: 18.1 kDa class I heat shock protein-like [Populus euphratica]
16 Hb_034585_040 0.1493188949 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
17 Hb_000300_400 0.1505668554 - - hypothetical protein PHAVU_001G114100g [Phaseolus vulgaris]
18 Hb_025087_010 0.1532035771 - - PREDICTED: RING-H2 finger protein ATL56 [Jatropha curcas]
19 Hb_004410_010 0.1532468283 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
20 Hb_005276_100 0.1539035375 - - PREDICTED: uncharacterized protein LOC105640215 [Jatropha curcas]

Gene co-expression network

sample Hb_001198_030 Hb_001198_030 Hb_001349_010 Hb_001349_010 Hb_001198_030--Hb_001349_010 Hb_004297_040 Hb_004297_040 Hb_001198_030--Hb_004297_040 Hb_001266_050 Hb_001266_050 Hb_001198_030--Hb_001266_050 Hb_010166_020 Hb_010166_020 Hb_001198_030--Hb_010166_020 Hb_000143_050 Hb_000143_050 Hb_001198_030--Hb_000143_050 Hb_001621_180 Hb_001621_180 Hb_001198_030--Hb_001621_180 Hb_000934_030 Hb_000934_030 Hb_001349_010--Hb_000934_030 Hb_000733_030 Hb_000733_030 Hb_001349_010--Hb_000733_030 Hb_042729_010 Hb_042729_010 Hb_001349_010--Hb_042729_010 Hb_025087_010 Hb_025087_010 Hb_001349_010--Hb_025087_010 Hb_001722_040 Hb_001722_040 Hb_001349_010--Hb_001722_040 Hb_000367_280 Hb_000367_280 Hb_004297_040--Hb_000367_280 Hb_001213_120 Hb_001213_120 Hb_004297_040--Hb_001213_120 Hb_078633_010 Hb_078633_010 Hb_004297_040--Hb_078633_010 Hb_005137_020 Hb_005137_020 Hb_004297_040--Hb_005137_020 Hb_001102_250 Hb_001102_250 Hb_004297_040--Hb_001102_250 Hb_001268_080 Hb_001268_080 Hb_004297_040--Hb_001268_080 Hb_000526_020 Hb_000526_020 Hb_001266_050--Hb_000526_020 Hb_001266_050--Hb_010166_020 Hb_000052_010 Hb_000052_010 Hb_001266_050--Hb_000052_010 Hb_004410_010 Hb_004410_010 Hb_001266_050--Hb_004410_010 Hb_000184_180 Hb_000184_180 Hb_001266_050--Hb_000184_180 Hb_002492_020 Hb_002492_020 Hb_010166_020--Hb_002492_020 Hb_010166_020--Hb_000052_010 Hb_010166_020--Hb_000526_020 Hb_007741_040 Hb_007741_040 Hb_010166_020--Hb_007741_040 Hb_030765_020 Hb_030765_020 Hb_000143_050--Hb_030765_020 Hb_005276_100 Hb_005276_100 Hb_000143_050--Hb_005276_100 Hb_000032_260 Hb_000032_260 Hb_000143_050--Hb_000032_260 Hb_005615_070 Hb_005615_070 Hb_000143_050--Hb_005615_070 Hb_000143_050--Hb_001722_040 Hb_183963_020 Hb_183963_020 Hb_000143_050--Hb_183963_020 Hb_001252_140 Hb_001252_140 Hb_001621_180--Hb_001252_140 Hb_007441_180 Hb_007441_180 Hb_001621_180--Hb_007441_180 Hb_000563_590 Hb_000563_590 Hb_001621_180--Hb_000563_590 Hb_009252_130 Hb_009252_130 Hb_001621_180--Hb_009252_130 Hb_001621_180--Hb_005615_070 Hb_001104_120 Hb_001104_120 Hb_001621_180--Hb_001104_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.71324 0.921336 0.093289 1.11438 14.6863 7.48157
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.7862 32.4755 16.8037 2.17018 0.296584

CAGE analysis