Hb_001198_050

Information

Type -
Description -
Location Contig1198: 31722-32069
Sequence    

Annotation

kegg
ID pop:POPTR_0004s22990g
description hypothetical protein
nr
ID XP_006385005.1
description hypothetical protein POPTR_0004s22990g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9N8A7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s22990g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001198_050 0.0 - - hypothetical protein POPTR_0004s22990g [Populus trichocarpa]
2 Hb_002890_250 0.2460817197 - - PREDICTED: uncharacterized protein LOC102611387 isoform X2 [Citrus sinensis]
3 Hb_000300_330 0.3090325266 - - -
4 Hb_000684_370 0.313055508 - - -
5 Hb_118419_030 0.3321050573 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2-like [Jatropha curcas]
6 Hb_000733_020 0.3334736977 - - -
7 Hb_019153_040 0.334827653 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
8 Hb_008014_070 0.3372289641 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_004147_040 0.3447173203 - - hypothetical protein JCGZ_15918 [Jatropha curcas]
10 Hb_003751_110 0.3452358861 - - unknown [Lotus japonicus]
11 Hb_001452_140 0.3485392435 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
12 Hb_164732_010 0.3575361958 - - -
13 Hb_032006_010 0.3579808325 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
14 Hb_000300_340 0.3605913215 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
15 Hb_002073_140 0.3623727715 - - -
16 Hb_006029_020 0.3679665911 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1, partial [Vitis vinifera]
17 Hb_004907_130 0.3690070769 - - -
18 Hb_000784_130 0.3713391002 - - hypothetical protein JCGZ_22813 [Jatropha curcas]
19 Hb_002924_050 0.3745382182 - - PREDICTED: uncharacterized protein LOC105629366 [Jatropha curcas]
20 Hb_000014_100 0.3747619178 - - -

Gene co-expression network

sample Hb_001198_050 Hb_001198_050 Hb_002890_250 Hb_002890_250 Hb_001198_050--Hb_002890_250 Hb_000300_330 Hb_000300_330 Hb_001198_050--Hb_000300_330 Hb_000684_370 Hb_000684_370 Hb_001198_050--Hb_000684_370 Hb_118419_030 Hb_118419_030 Hb_001198_050--Hb_118419_030 Hb_000733_020 Hb_000733_020 Hb_001198_050--Hb_000733_020 Hb_019153_040 Hb_019153_040 Hb_001198_050--Hb_019153_040 Hb_000988_040 Hb_000988_040 Hb_002890_250--Hb_000988_040 Hb_000638_020 Hb_000638_020 Hb_002890_250--Hb_000638_020 Hb_008014_070 Hb_008014_070 Hb_002890_250--Hb_008014_070 Hb_002890_250--Hb_000684_370 Hb_004907_130 Hb_004907_130 Hb_002890_250--Hb_004907_130 Hb_000300_340 Hb_000300_340 Hb_000300_330--Hb_000300_340 Hb_164732_010 Hb_164732_010 Hb_000300_330--Hb_164732_010 Hb_000567_160 Hb_000567_160 Hb_000300_330--Hb_000567_160 Hb_000300_330--Hb_019153_040 Hb_009680_030 Hb_009680_030 Hb_000300_330--Hb_009680_030 Hb_002983_020 Hb_002983_020 Hb_000300_330--Hb_002983_020 Hb_000014_100 Hb_000014_100 Hb_000684_370--Hb_000014_100 Hb_005657_010 Hb_005657_010 Hb_000684_370--Hb_005657_010 Hb_001767_010 Hb_001767_010 Hb_000684_370--Hb_001767_010 Hb_143629_050 Hb_143629_050 Hb_000684_370--Hb_143629_050 Hb_000684_370--Hb_019153_040 Hb_004800_160 Hb_004800_160 Hb_000684_370--Hb_004800_160 Hb_009812_020 Hb_009812_020 Hb_118419_030--Hb_009812_020 Hb_019973_030 Hb_019973_030 Hb_118419_030--Hb_019973_030 Hb_001452_140 Hb_001452_140 Hb_118419_030--Hb_001452_140 Hb_118419_030--Hb_000684_370 Hb_163950_010 Hb_163950_010 Hb_118419_030--Hb_163950_010 Hb_003906_100 Hb_003906_100 Hb_118419_030--Hb_003906_100 Hb_000739_290 Hb_000739_290 Hb_000733_020--Hb_000739_290 Hb_005228_100 Hb_005228_100 Hb_000733_020--Hb_005228_100 Hb_027556_010 Hb_027556_010 Hb_000733_020--Hb_027556_010 Hb_006846_090 Hb_006846_090 Hb_000733_020--Hb_006846_090 Hb_001946_360 Hb_001946_360 Hb_000733_020--Hb_001946_360 Hb_000733_020--Hb_001452_140 Hb_019153_040--Hb_164732_010 Hb_019153_040--Hb_002983_020 Hb_004032_240 Hb_004032_240 Hb_019153_040--Hb_004032_240 Hb_019153_040--Hb_009680_030 Hb_010931_110 Hb_010931_110 Hb_019153_040--Hb_010931_110 Hb_008376_010 Hb_008376_010 Hb_019153_040--Hb_008376_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.319149 0 0 0 0.914594 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.5129 0 0.539066 0.189604 0

CAGE analysis