Hb_001198_080

Information

Type -
Description -
Location Contig1198: 41743-49093
Sequence    

Annotation

kegg
ID rcu:RCOM_0321970
description hypothetical protein
nr
ID XP_012071310.1
description PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
swissprot
ID Q9NUJ3
description T-complex protein 11-like protein 1 OS=Homo sapiens GN=TCP11L1 PE=1 SV=1
trembl
ID A0A067KRU1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04994 PE=4 SV=1
Gene Ontology
ID GO:0009506
description t-complex protein 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05935: 41691-49038
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001198_080 0.0 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
2 Hb_000818_120 0.0959338493 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003106_200 0.1114660644 - - PREDICTED: uncharacterized protein LOC105640430 isoform X1 [Jatropha curcas]
4 Hb_001155_050 0.1289503488 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
5 Hb_003549_130 0.1380453318 - - neutral/alkaline invertase [Manihot esculenta]
6 Hb_002217_190 0.1385673534 - - invertase [Hevea brasiliensis]
7 Hb_004679_040 0.1419919978 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
8 Hb_007426_220 0.1452849667 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
9 Hb_011671_340 0.1476327423 - - small GTPase [Hevea brasiliensis]
10 Hb_000032_200 0.1484504497 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
11 Hb_001511_030 0.1487513232 - - PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 [Jatropha curcas]
12 Hb_002249_170 0.1490288743 - - copine, putative [Ricinus communis]
13 Hb_005527_060 0.1500955803 - - malic enzyme, putative [Ricinus communis]
14 Hb_004163_030 0.1521757471 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A10 [Jatropha curcas]
15 Hb_000011_560 0.1546690336 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
16 Hb_000046_310 0.1550557355 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
17 Hb_001141_050 0.1571861912 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
18 Hb_006445_020 0.1600537954 - - hypothetical protein L484_026741 [Morus notabilis]
19 Hb_000392_240 0.1612401722 - - DNA binding protein, putative [Ricinus communis]
20 Hb_002045_090 0.1618859924 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]

Gene co-expression network

sample Hb_001198_080 Hb_001198_080 Hb_000818_120 Hb_000818_120 Hb_001198_080--Hb_000818_120 Hb_003106_200 Hb_003106_200 Hb_001198_080--Hb_003106_200 Hb_001155_050 Hb_001155_050 Hb_001198_080--Hb_001155_050 Hb_003549_130 Hb_003549_130 Hb_001198_080--Hb_003549_130 Hb_002217_190 Hb_002217_190 Hb_001198_080--Hb_002217_190 Hb_004679_040 Hb_004679_040 Hb_001198_080--Hb_004679_040 Hb_000818_120--Hb_003106_200 Hb_001511_030 Hb_001511_030 Hb_000818_120--Hb_001511_030 Hb_000046_310 Hb_000046_310 Hb_000818_120--Hb_000046_310 Hb_000818_120--Hb_001155_050 Hb_002249_170 Hb_002249_170 Hb_000818_120--Hb_002249_170 Hb_000928_250 Hb_000928_250 Hb_003106_200--Hb_000928_250 Hb_015026_020 Hb_015026_020 Hb_003106_200--Hb_015026_020 Hb_003106_200--Hb_002249_170 Hb_000032_200 Hb_000032_200 Hb_003106_200--Hb_000032_200 Hb_011671_340 Hb_011671_340 Hb_001155_050--Hb_011671_340 Hb_015778_040 Hb_015778_040 Hb_001155_050--Hb_015778_040 Hb_007426_220 Hb_007426_220 Hb_001155_050--Hb_007426_220 Hb_000589_170 Hb_000589_170 Hb_001155_050--Hb_000589_170 Hb_029253_010 Hb_029253_010 Hb_001155_050--Hb_029253_010 Hb_003549_130--Hb_003106_200 Hb_003549_130--Hb_015026_020 Hb_003430_040 Hb_003430_040 Hb_003549_130--Hb_003430_040 Hb_003549_130--Hb_000032_200 Hb_003549_130--Hb_000818_120 Hb_001519_060 Hb_001519_060 Hb_002217_190--Hb_001519_060 Hb_008173_060 Hb_008173_060 Hb_002217_190--Hb_008173_060 Hb_002217_190--Hb_000818_120 Hb_001627_010 Hb_001627_010 Hb_002217_190--Hb_001627_010 Hb_176472_020 Hb_176472_020 Hb_002217_190--Hb_176472_020 Hb_091318_010 Hb_091318_010 Hb_004679_040--Hb_091318_010 Hb_004679_040--Hb_001155_050 Hb_054865_050 Hb_054865_050 Hb_004679_040--Hb_054865_050 Hb_000000_480 Hb_000000_480 Hb_004679_040--Hb_000000_480 Hb_000757_130 Hb_000757_130 Hb_004679_040--Hb_000757_130 Hb_004679_040--Hb_002249_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.97718 28.5684 93.3463 31.0905 2.65819 3.81058
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.8891 9.92224 15.5515 10.1156 25.9324

CAGE analysis