Hb_001198_100

Information

Type -
Description -
Location Contig1198: 57292-62966
Sequence    

Annotation

kegg
ID rcu:RCOM_0406560
description serine hydroxymethyltransferase, putative (EC:2.1.2.1)
nr
ID XP_012071312.1
description PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
swissprot
ID Q9LM59
description Serine hydroxymethyltransferase 6 OS=Arabidopsis thaliana GN=SHM6 PE=2 SV=1
trembl
ID A0A067L2W3
description Serine hydroxymethyltransferase OS=Jatropha curcas GN=JCGZ_04997 PE=3 SV=1
Gene Ontology
ID GO:0004372
description serine hydroxymethyltransferase 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05938: 57083-57538 , PASA_asmbl_05939: 57567-57693 , PASA_asmbl_05940: 59576-59936 , PASA_asmbl_05941: 57865-62246 , PASA_asmbl_05942: 58933-59209
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001198_100 0.0 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
2 Hb_009767_110 0.0545970284 - - -
3 Hb_000028_480 0.0587407323 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
4 Hb_006649_050 0.0618384253 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
5 Hb_006915_030 0.062510803 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 8 [Jatropha curcas]
6 Hb_001409_020 0.0642474442 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
7 Hb_001341_170 0.0653235858 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
8 Hb_001369_730 0.0657672962 - - F5O11.10, putative isoform 1 [Theobroma cacao]
9 Hb_001538_130 0.0661698264 - - conserved hypothetical protein [Ricinus communis]
10 Hb_009548_020 0.0665518368 - - structural constituent of cell wall, putative [Ricinus communis]
11 Hb_002518_260 0.0666625147 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
12 Hb_172632_080 0.0678144251 - - PREDICTED: uncharacterized protein LOC105141138 isoform X1 [Populus euphratica]
13 Hb_010618_010 0.0685136061 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
14 Hb_167498_010 0.0690734392 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
15 Hb_004225_050 0.0691969456 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
16 Hb_002942_100 0.0693679149 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
17 Hb_015934_040 0.0693857972 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
18 Hb_044728_010 0.0694177888 - - -
19 Hb_004143_130 0.0699222399 - - PREDICTED: BEACH domain-containing protein lvsC [Jatropha curcas]
20 Hb_000035_320 0.0709430066 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22 [Jatropha curcas]

Gene co-expression network

sample Hb_001198_100 Hb_001198_100 Hb_009767_110 Hb_009767_110 Hb_001198_100--Hb_009767_110 Hb_000028_480 Hb_000028_480 Hb_001198_100--Hb_000028_480 Hb_006649_050 Hb_006649_050 Hb_001198_100--Hb_006649_050 Hb_006915_030 Hb_006915_030 Hb_001198_100--Hb_006915_030 Hb_001409_020 Hb_001409_020 Hb_001198_100--Hb_001409_020 Hb_001341_170 Hb_001341_170 Hb_001198_100--Hb_001341_170 Hb_044728_010 Hb_044728_010 Hb_009767_110--Hb_044728_010 Hb_009767_110--Hb_006649_050 Hb_002725_120 Hb_002725_120 Hb_009767_110--Hb_002725_120 Hb_008554_130 Hb_008554_130 Hb_009767_110--Hb_008554_130 Hb_000684_470 Hb_000684_470 Hb_009767_110--Hb_000684_470 Hb_002518_260 Hb_002518_260 Hb_000028_480--Hb_002518_260 Hb_007479_040 Hb_007479_040 Hb_000028_480--Hb_007479_040 Hb_000792_010 Hb_000792_010 Hb_000028_480--Hb_000792_010 Hb_000976_300 Hb_000976_300 Hb_000028_480--Hb_000976_300 Hb_028912_050 Hb_028912_050 Hb_000028_480--Hb_028912_050 Hb_000165_250 Hb_000165_250 Hb_006649_050--Hb_000165_250 Hb_006649_050--Hb_002725_120 Hb_004225_050 Hb_004225_050 Hb_006649_050--Hb_004225_050 Hb_000291_050 Hb_000291_050 Hb_006649_050--Hb_000291_050 Hb_002942_100 Hb_002942_100 Hb_006915_030--Hb_002942_100 Hb_000571_110 Hb_000571_110 Hb_006915_030--Hb_000571_110 Hb_000723_130 Hb_000723_130 Hb_006915_030--Hb_000723_130 Hb_009548_020 Hb_009548_020 Hb_006915_030--Hb_009548_020 Hb_006915_030--Hb_004225_050 Hb_010618_010 Hb_010618_010 Hb_001409_020--Hb_010618_010 Hb_001248_060 Hb_001248_060 Hb_001409_020--Hb_001248_060 Hb_013399_100 Hb_013399_100 Hb_001409_020--Hb_013399_100 Hb_167498_010 Hb_167498_010 Hb_001409_020--Hb_167498_010 Hb_008406_200 Hb_008406_200 Hb_001409_020--Hb_008406_200 Hb_007576_110 Hb_007576_110 Hb_001409_020--Hb_007576_110 Hb_004724_150 Hb_004724_150 Hb_001341_170--Hb_004724_150 Hb_000225_040 Hb_000225_040 Hb_001341_170--Hb_000225_040 Hb_000890_210 Hb_000890_210 Hb_001341_170--Hb_000890_210 Hb_000556_160 Hb_000556_160 Hb_001341_170--Hb_000556_160 Hb_011485_070 Hb_011485_070 Hb_001341_170--Hb_011485_070 Hb_001341_170--Hb_010618_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.4495 13.1256 7.40352 11.8325 12.212 18.1826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.1152 13.2285 18.9179 13.1268 14.0397

CAGE analysis