Hb_001199_110

Information

Type -
Description -
Location Contig1199: 172766-177096
Sequence    

Annotation

kegg
ID pop:POPTR_0007s10140g
description hypothetical protein
nr
ID XP_012079363.1
description PREDICTED: uncharacterized protein ycf36 isoform X1 [Jatropha curcas]
swissprot
ID P51273
description Uncharacterized protein ycf36 OS=Porphyra purpurea GN=ycf36 PE=3 SV=1
trembl
ID A0A067KJN4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12505 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05963: 172716-177002 , PASA_asmbl_05964: 174877-175389
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001199_110 0.0 - - PREDICTED: uncharacterized protein ycf36 isoform X1 [Jatropha curcas]
2 Hb_006615_090 0.0365641115 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
3 Hb_002477_190 0.0730762606 - - hypothetical protein EUGRSUZ_C03380, partial [Eucalyptus grandis]
4 Hb_000803_080 0.0736483254 desease resistance Gene Name: ABC_tran ATP-binding cassette transporter, putative [Ricinus communis]
5 Hb_001141_100 0.0741911043 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
6 Hb_147028_010 0.0762509349 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Prunus mume]
7 Hb_001158_130 0.0774202828 - - PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas]
8 Hb_000684_070 0.0787560551 - - PREDICTED: uncharacterized protein LOC105642198 isoform X1 [Jatropha curcas]
9 Hb_028491_010 0.0809997838 - - hypothetical protein JCGZ_12857 [Jatropha curcas]
10 Hb_001277_130 0.0816531059 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
11 Hb_005010_030 0.0848036938 - - PREDICTED: lecithin-cholesterol acyltransferase-like 1 [Jatropha curcas]
12 Hb_001047_210 0.085225754 - - PSI reaction center subunit II [Citrus sinensis]
13 Hb_008847_050 0.0864214862 - - conserved hypothetical protein [Ricinus communis]
14 Hb_008536_020 0.091509851 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
15 Hb_004607_110 0.0937942533 - - PREDICTED: serine/threonine-protein kinase Nek6 [Jatropha curcas]
16 Hb_000329_780 0.0942358366 - - hypothetical protein POPTR_0403s00200g [Populus trichocarpa]
17 Hb_012098_120 0.0949347747 - - PREDICTED: putative elongation of fatty acids protein DDB_G0272012 [Jatropha curcas]
18 Hb_166718_010 0.097496316 - - heat-shock protein, putative [Ricinus communis]
19 Hb_002119_100 0.0975717998 - - cytochrome B561, putative [Ricinus communis]
20 Hb_004807_010 0.0982552644 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]

Gene co-expression network

sample Hb_001199_110 Hb_001199_110 Hb_006615_090 Hb_006615_090 Hb_001199_110--Hb_006615_090 Hb_002477_190 Hb_002477_190 Hb_001199_110--Hb_002477_190 Hb_000803_080 Hb_000803_080 Hb_001199_110--Hb_000803_080 Hb_001141_100 Hb_001141_100 Hb_001199_110--Hb_001141_100 Hb_147028_010 Hb_147028_010 Hb_001199_110--Hb_147028_010 Hb_001158_130 Hb_001158_130 Hb_001199_110--Hb_001158_130 Hb_006615_090--Hb_002477_190 Hb_005010_030 Hb_005010_030 Hb_006615_090--Hb_005010_030 Hb_001047_210 Hb_001047_210 Hb_006615_090--Hb_001047_210 Hb_006615_090--Hb_001141_100 Hb_008847_050 Hb_008847_050 Hb_006615_090--Hb_008847_050 Hb_001711_140 Hb_001711_140 Hb_002477_190--Hb_001711_140 Hb_002477_190--Hb_005010_030 Hb_029587_010 Hb_029587_010 Hb_002477_190--Hb_029587_010 Hb_144550_010 Hb_144550_010 Hb_002477_190--Hb_144550_010 Hb_003913_120 Hb_003913_120 Hb_000803_080--Hb_003913_120 Hb_004807_010 Hb_004807_010 Hb_000803_080--Hb_004807_010 Hb_028491_010 Hb_028491_010 Hb_000803_080--Hb_028491_010 Hb_004607_110 Hb_004607_110 Hb_000803_080--Hb_004607_110 Hb_000803_080--Hb_147028_010 Hb_012098_120 Hb_012098_120 Hb_000803_080--Hb_012098_120 Hb_001141_100--Hb_028491_010 Hb_001141_100--Hb_008847_050 Hb_001141_100--Hb_147028_010 Hb_001141_100--Hb_004607_110 Hb_001277_130 Hb_001277_130 Hb_001141_100--Hb_001277_130 Hb_009193_070 Hb_009193_070 Hb_001141_100--Hb_009193_070 Hb_147028_010--Hb_028491_010 Hb_147028_010--Hb_001277_130 Hb_086300_010 Hb_086300_010 Hb_147028_010--Hb_086300_010 Hb_001735_040 Hb_001735_040 Hb_147028_010--Hb_001735_040 Hb_189208_070 Hb_189208_070 Hb_001158_130--Hb_189208_070 Hb_012098_100 Hb_012098_100 Hb_001158_130--Hb_012098_100 Hb_000881_020 Hb_000881_020 Hb_001158_130--Hb_000881_020 Hb_000684_070 Hb_000684_070 Hb_001158_130--Hb_000684_070 Hb_000042_280 Hb_000042_280 Hb_001158_130--Hb_000042_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.67718 36.263 47.6153 0.133737 0.0811992
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.135793 0 0 0 71.6008

CAGE analysis