Hb_001205_030

Information

Type transcription factor
Description TF Family: zf-HD
Location Contig1205: 32135-33178
Sequence    

Annotation

kegg
ID rcu:RCOM_0536100
description transcription factor, putative
nr
ID XP_006380765.1
description hypothetical protein POPTR_0007s12970g [Populus trichocarpa]
swissprot
ID Q9ZPW7
description Zinc-finger homeodomain protein 6 OS=Arabidopsis thaliana GN=ZHD6 PE=1 SV=1
trembl
ID U5GAU4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12970g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 006_L19.ab1: 31867-32623 , 017_O18.ab1: 31867-32587

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001205_030 0.0 transcription factor TF Family: zf-HD hypothetical protein POPTR_0007s12970g [Populus trichocarpa]
2 Hb_010921_030 0.1083092527 transcription factor TF Family: PHD PREDICTED: PHD finger protein At2g01810 [Jatropha curcas]
3 Hb_000925_160 0.1140415688 - - PREDICTED: digalactosyldiacylglycerol synthase 1, chloroplastic [Jatropha curcas]
4 Hb_000345_200 0.1230703881 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
5 Hb_003078_050 0.1306638872 - - PREDICTED: serine/threonine-protein kinase OXI1 [Jatropha curcas]
6 Hb_126380_010 0.1334367995 desease resistance Gene Name: NB-ARC ATP binding protein, putative [Ricinus communis]
7 Hb_189208_020 0.1370199711 - - LRX2, putative [Ricinus communis]
8 Hb_000634_070 0.1414378776 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
9 Hb_000953_050 0.1424810444 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
10 Hb_000243_380 0.1439995516 - - PREDICTED: histone H1 [Jatropha curcas]
11 Hb_001268_390 0.1489346046 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
12 Hb_003752_100 0.1512152644 - - PREDICTED: FRIGIDA-like protein 3 [Jatropha curcas]
13 Hb_001564_080 0.1515933955 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
14 Hb_000432_040 0.1533895536 - - PREDICTED: remorin-like [Jatropha curcas]
15 Hb_001525_010 0.1540751218 - - PREDICTED: uncharacterized protein LOC105638298 [Jatropha curcas]
16 Hb_003055_140 0.1556894307 transcription factor TF Family: SNF2 PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
17 Hb_001369_570 0.1576591451 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
18 Hb_003097_100 0.1577685683 - - probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic [Jatropha curcas]
19 Hb_003055_060 0.1589001097 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105649487 isoform X1 [Jatropha curcas]
20 Hb_000976_290 0.1607933536 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105646228 [Jatropha curcas]

Gene co-expression network

sample Hb_001205_030 Hb_001205_030 Hb_010921_030 Hb_010921_030 Hb_001205_030--Hb_010921_030 Hb_000925_160 Hb_000925_160 Hb_001205_030--Hb_000925_160 Hb_000345_200 Hb_000345_200 Hb_001205_030--Hb_000345_200 Hb_003078_050 Hb_003078_050 Hb_001205_030--Hb_003078_050 Hb_126380_010 Hb_126380_010 Hb_001205_030--Hb_126380_010 Hb_189208_020 Hb_189208_020 Hb_001205_030--Hb_189208_020 Hb_000953_050 Hb_000953_050 Hb_010921_030--Hb_000953_050 Hb_000243_380 Hb_000243_380 Hb_010921_030--Hb_000243_380 Hb_029223_050 Hb_029223_050 Hb_010921_030--Hb_029223_050 Hb_000003_550 Hb_000003_550 Hb_010921_030--Hb_000003_550 Hb_003752_100 Hb_003752_100 Hb_010921_030--Hb_003752_100 Hb_000627_180 Hb_000627_180 Hb_000925_160--Hb_000627_180 Hb_000735_160 Hb_000735_160 Hb_000925_160--Hb_000735_160 Hb_144744_010 Hb_144744_010 Hb_000925_160--Hb_144744_010 Hb_000236_410 Hb_000236_410 Hb_000925_160--Hb_000236_410 Hb_000390_100 Hb_000390_100 Hb_000925_160--Hb_000390_100 Hb_000345_200--Hb_126380_010 Hb_000732_250 Hb_000732_250 Hb_000345_200--Hb_000732_250 Hb_000345_200--Hb_189208_020 Hb_001894_050 Hb_001894_050 Hb_000345_200--Hb_001894_050 Hb_001794_060 Hb_001794_060 Hb_000345_200--Hb_001794_060 Hb_000634_070 Hb_000634_070 Hb_003078_050--Hb_000634_070 Hb_000069_230 Hb_000069_230 Hb_003078_050--Hb_000069_230 Hb_028207_040 Hb_028207_040 Hb_003078_050--Hb_028207_040 Hb_003097_100 Hb_003097_100 Hb_003078_050--Hb_003097_100 Hb_000258_380 Hb_000258_380 Hb_003078_050--Hb_000258_380 Hb_126380_010--Hb_001794_060 Hb_008511_100 Hb_008511_100 Hb_126380_010--Hb_008511_100 Hb_126380_010--Hb_189208_020 Hb_002097_200 Hb_002097_200 Hb_126380_010--Hb_002097_200 Hb_189208_020--Hb_002097_200 Hb_189208_020--Hb_001894_050 Hb_003175_030 Hb_003175_030 Hb_189208_020--Hb_003175_030 Hb_005725_210 Hb_005725_210 Hb_189208_020--Hb_005725_210 Hb_006788_140 Hb_006788_140 Hb_189208_020--Hb_006788_140 Hb_001564_080 Hb_001564_080 Hb_189208_020--Hb_001564_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.7332 63.7786 7.70068 8.22883 14.4639 9.83083
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.3971 13.5657 15.9715 13.6626 9.14926

CAGE analysis