Hb_001205_080

Information

Type -
Description -
Location Contig1205: 49378-51950
Sequence    

Annotation

kegg
ID rcu:RCOM_0536830
description Protein FAM96B, putative
nr
ID XP_002521596.1
description Protein FAM96B, putative [Ricinus communis]
swissprot
ID Q9C9G6
description MIP18 family protein At1g68310 OS=Arabidopsis thaliana GN=At1g68310 PE=2 SV=2
trembl
ID B9S6H7
description Protein FAM96B, putative OS=Ricinus communis GN=RCOM_0536830 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001205_080 0.0 - - Protein FAM96B, putative [Ricinus communis]
2 Hb_002686_200 0.0931945035 - - glucosidase II beta subunit, putative [Ricinus communis]
3 Hb_006824_010 0.1032380991 - - PREDICTED: origin of replication complex subunit 4 [Jatropha curcas]
4 Hb_002693_030 0.1036735566 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
5 Hb_000742_010 0.1047580072 - - PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic isoform X2 [Jatropha curcas]
6 Hb_065968_010 0.1070284677 - - PREDICTED: probable glycosyltransferase At3g07620 isoform X2 [Jatropha curcas]
7 Hb_000703_330 0.1083231212 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005754_040 0.110083335 - - PREDICTED: uncharacterized protein LOC105636678 isoform X2 [Jatropha curcas]
9 Hb_001269_130 0.11087041 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
10 Hb_002477_290 0.1126014844 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
11 Hb_006637_030 0.112781533 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
12 Hb_012262_030 0.1157992501 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
13 Hb_001633_080 0.1162909781 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
14 Hb_001828_180 0.1165987623 - - 26S proteasome regulatory subunit S3, putative [Ricinus communis]
15 Hb_159809_070 0.1170235912 - - phospholipase A-2-activating protein, putative [Ricinus communis]
16 Hb_007850_030 0.1170357378 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
17 Hb_009193_090 0.1177292298 - - PREDICTED: protein root UVB sensitive 3 isoform X1 [Jatropha curcas]
18 Hb_000174_260 0.1186000227 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent) [Jatropha curcas]
19 Hb_000197_190 0.1188451669 - - PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Jatropha curcas]
20 Hb_001493_150 0.1218096978 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_001205_080 Hb_001205_080 Hb_002686_200 Hb_002686_200 Hb_001205_080--Hb_002686_200 Hb_006824_010 Hb_006824_010 Hb_001205_080--Hb_006824_010 Hb_002693_030 Hb_002693_030 Hb_001205_080--Hb_002693_030 Hb_000742_010 Hb_000742_010 Hb_001205_080--Hb_000742_010 Hb_065968_010 Hb_065968_010 Hb_001205_080--Hb_065968_010 Hb_000703_330 Hb_000703_330 Hb_001205_080--Hb_000703_330 Hb_002686_200--Hb_065968_010 Hb_159809_070 Hb_159809_070 Hb_002686_200--Hb_159809_070 Hb_001269_600 Hb_001269_600 Hb_002686_200--Hb_001269_600 Hb_003159_050 Hb_003159_050 Hb_002686_200--Hb_003159_050 Hb_007933_040 Hb_007933_040 Hb_002686_200--Hb_007933_040 Hb_002686_200--Hb_006824_010 Hb_002006_150 Hb_002006_150 Hb_006824_010--Hb_002006_150 Hb_007904_300 Hb_007904_300 Hb_006824_010--Hb_007904_300 Hb_000139_080 Hb_000139_080 Hb_006824_010--Hb_000139_080 Hb_006189_020 Hb_006189_020 Hb_006824_010--Hb_006189_020 Hb_003098_070 Hb_003098_070 Hb_006824_010--Hb_003098_070 Hb_001269_130 Hb_001269_130 Hb_006824_010--Hb_001269_130 Hb_006637_030 Hb_006637_030 Hb_002693_030--Hb_006637_030 Hb_007850_030 Hb_007850_030 Hb_002693_030--Hb_007850_030 Hb_000330_090 Hb_000330_090 Hb_002693_030--Hb_000330_090 Hb_053709_050 Hb_053709_050 Hb_002693_030--Hb_053709_050 Hb_002534_130 Hb_002534_130 Hb_002693_030--Hb_002534_130 Hb_026198_010 Hb_026198_010 Hb_002693_030--Hb_026198_010 Hb_000076_210 Hb_000076_210 Hb_000742_010--Hb_000076_210 Hb_000174_260 Hb_000174_260 Hb_000742_010--Hb_000174_260 Hb_001633_090 Hb_001633_090 Hb_000742_010--Hb_001633_090 Hb_000913_030 Hb_000913_030 Hb_000742_010--Hb_000913_030 Hb_000742_010--Hb_006824_010 Hb_005754_040 Hb_005754_040 Hb_000742_010--Hb_005754_040 Hb_003605_020 Hb_003605_020 Hb_065968_010--Hb_003605_020 Hb_065968_010--Hb_159809_070 Hb_002552_040 Hb_002552_040 Hb_065968_010--Hb_002552_040 Hb_074197_040 Hb_074197_040 Hb_065968_010--Hb_074197_040 Hb_001957_010 Hb_001957_010 Hb_065968_010--Hb_001957_010 Hb_007416_070 Hb_007416_070 Hb_000703_330--Hb_007416_070 Hb_008289_040 Hb_008289_040 Hb_000703_330--Hb_008289_040 Hb_000009_060 Hb_000009_060 Hb_000703_330--Hb_000009_060 Hb_000197_190 Hb_000197_190 Hb_000703_330--Hb_000197_190 Hb_000703_330--Hb_065968_010 Hb_002639_030 Hb_002639_030 Hb_000703_330--Hb_002639_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.02189 6.60692 15.2379 16.0121 2.71403 4.12933
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.57137 8.50586 7.92977 17.742 8.66395

CAGE analysis