Hb_001205_090

Information

Type -
Description -
Location Contig1205: 52139-54637
Sequence    

Annotation

kegg
ID rcu:RCOM_0536840
description transporter, putative
nr
ID XP_012071644.1
description PREDICTED: random slug protein 5 [Jatropha curcas]
swissprot
ID Q55CU8
description Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1
trembl
ID A0A067KR40
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05319 PE=4 SV=1
Gene Ontology
ID GO:0005622
description random slug protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06326: 52049-54603
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001205_090 0.0 - - PREDICTED: random slug protein 5 [Jatropha curcas]
2 Hb_004659_120 0.0882559446 rubber biosynthesis Gene Name: CPTL PREDICTED: dehydrodolichyl diphosphate syntase complex subunit NUS1 isoform X3 [Jatropha curcas]
3 Hb_010483_020 0.1021491872 - - latex allergen [Hevea brasiliensis]
4 Hb_001696_030 0.1100149646 - - cytochrome P450, putative [Ricinus communis]
5 Hb_023988_020 0.1236259342 - - PREDICTED: transmembrane protein 19 [Prunus mume]
6 Hb_001017_090 0.1251156123 - - -
7 Hb_007766_010 0.1265056759 - - hypothetical protein JCGZ_06718 [Jatropha curcas]
8 Hb_002506_010 0.1300443359 - - choline transporter-related family protein [Populus trichocarpa]
9 Hb_010174_130 0.1354791236 - - PREDICTED: regulator of G-protein signaling 1 [Jatropha curcas]
10 Hb_002374_340 0.1365422345 - - Two-component response regulator ARR9, putative [Ricinus communis]
11 Hb_000787_070 0.138276126 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
12 Hb_000376_110 0.1383442491 - - PREDICTED: O-acyltransferase WSD1-like [Brachypodium distachyon]
13 Hb_010174_120 0.1384394331 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1-like [Gossypium raimondii]
14 Hb_004032_440 0.1410580423 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; Short=HMG-CoA reductase 1 [Hevea brasiliensis]
15 Hb_006132_060 0.1425592263 - - phospholipid/glycerol acyltransferase family protein [Populus trichocarpa]
16 Hb_000185_120 0.1426932682 - - PREDICTED: uncharacterized protein LOC105640342 [Jatropha curcas]
17 Hb_008016_010 0.14409358 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]
18 Hb_007919_050 0.1442425181 - - PREDICTED: uncharacterized protein LOC105635142 isoform X2 [Jatropha curcas]
19 Hb_004724_040 0.144600985 - - PREDICTED: uncharacterized protein LOC105640153 isoform X1 [Jatropha curcas]
20 Hb_001439_120 0.1449926725 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001205_090 Hb_001205_090 Hb_004659_120 Hb_004659_120 Hb_001205_090--Hb_004659_120 Hb_010483_020 Hb_010483_020 Hb_001205_090--Hb_010483_020 Hb_001696_030 Hb_001696_030 Hb_001205_090--Hb_001696_030 Hb_023988_020 Hb_023988_020 Hb_001205_090--Hb_023988_020 Hb_001017_090 Hb_001017_090 Hb_001205_090--Hb_001017_090 Hb_007766_010 Hb_007766_010 Hb_001205_090--Hb_007766_010 Hb_000184_040 Hb_000184_040 Hb_004659_120--Hb_000184_040 Hb_023226_090 Hb_023226_090 Hb_004659_120--Hb_023226_090 Hb_006831_010 Hb_006831_010 Hb_004659_120--Hb_006831_010 Hb_000762_020 Hb_000762_020 Hb_004659_120--Hb_000762_020 Hb_010174_120 Hb_010174_120 Hb_004659_120--Hb_010174_120 Hb_010483_020--Hb_007766_010 Hb_000481_020 Hb_000481_020 Hb_010483_020--Hb_000481_020 Hb_010483_020--Hb_004659_120 Hb_010483_020--Hb_001696_030 Hb_001922_190 Hb_001922_190 Hb_010483_020--Hb_001922_190 Hb_005167_040 Hb_005167_040 Hb_001696_030--Hb_005167_040 Hb_001696_030--Hb_023988_020 Hb_001696_030--Hb_007766_010 Hb_001696_030--Hb_004659_120 Hb_000376_110 Hb_000376_110 Hb_001696_030--Hb_000376_110 Hb_000920_140 Hb_000920_140 Hb_023988_020--Hb_000920_140 Hb_004032_440 Hb_004032_440 Hb_023988_020--Hb_004032_440 Hb_023988_020--Hb_000184_040 Hb_023988_020--Hb_000376_110 Hb_005271_170 Hb_005271_170 Hb_023988_020--Hb_005271_170 Hb_002506_010 Hb_002506_010 Hb_001017_090--Hb_002506_010 Hb_001476_100 Hb_001476_100 Hb_001017_090--Hb_001476_100 Hb_009510_030 Hb_009510_030 Hb_001017_090--Hb_009510_030 Hb_010931_100 Hb_010931_100 Hb_001017_090--Hb_010931_100 Hb_000264_190 Hb_000264_190 Hb_001017_090--Hb_000264_190 Hb_000258_430 Hb_000258_430 Hb_001017_090--Hb_000258_430 Hb_004724_040 Hb_004724_040 Hb_007766_010--Hb_004724_040 Hb_006070_010 Hb_006070_010 Hb_007766_010--Hb_006070_010 Hb_007766_010--Hb_000481_020 Hb_007766_010--Hb_000258_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
197.808 5.74922 7.18789 78.0834 205.673 170.6
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
254.545 127.59 153.311 11.5346 7.90785

CAGE analysis