Hb_001205_120

Information

Type -
Description -
Location Contig1205: 83596-90326
Sequence    

Annotation

kegg
ID cmo:103494381
description succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial
nr
ID XP_011025771.1
description PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Populus euphratica]
swissprot
ID O82663
description Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial OS=Arabidopsis thaliana GN=SDH1-1 PE=1 SV=1
trembl
ID A0A067K1Y8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18113 PE=4 SV=1
Gene Ontology
ID GO:0005749
description succinate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06333: 83611-90398
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001205_120 0.0 - - PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Populus euphratica]
2 Hb_000441_220 0.0636696014 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_002044_150 0.0712025816 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
4 Hb_001584_140 0.0730812112 - - PREDICTED: uncharacterized protein LOC105647409 [Jatropha curcas]
5 Hb_023344_120 0.0739812 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
6 Hb_000915_260 0.0772098562 - - PREDICTED: uncharacterized protein LOC105628514 isoform X1 [Jatropha curcas]
7 Hb_168978_030 0.0799514154 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 8 [Jatropha curcas]
8 Hb_032986_010 0.0815811142 - - Nicotinate-nucleotide pyrophosphorylase [carboxylating], putative [Ricinus communis]
9 Hb_005000_170 0.083748869 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
10 Hb_000207_050 0.0837739155 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
11 Hb_021409_180 0.0842421627 - - PREDICTED: glutamine-dependent NAD(+) synthetase [Jatropha curcas]
12 Hb_002169_050 0.0856572945 - - PREDICTED: inositol 1,3,4-trisphosphate 5/6-kinase 4 [Jatropha curcas]
13 Hb_007479_040 0.0859245459 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002909_140 0.0867728878 - - PREDICTED: D-xylose-proton symporter-like 2 [Jatropha curcas]
15 Hb_000617_180 0.0873281088 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
16 Hb_004846_220 0.0874157417 - - PREDICTED: probable protein phosphatase 2C 11 isoform X1 [Jatropha curcas]
17 Hb_009898_050 0.0875770526 - - PREDICTED: beta-taxilin [Jatropha curcas]
18 Hb_020378_030 0.0880617763 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
19 Hb_000138_100 0.0881085504 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
20 Hb_001472_060 0.088339211 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001205_120 Hb_001205_120 Hb_000441_220 Hb_000441_220 Hb_001205_120--Hb_000441_220 Hb_002044_150 Hb_002044_150 Hb_001205_120--Hb_002044_150 Hb_001584_140 Hb_001584_140 Hb_001205_120--Hb_001584_140 Hb_023344_120 Hb_023344_120 Hb_001205_120--Hb_023344_120 Hb_000915_260 Hb_000915_260 Hb_001205_120--Hb_000915_260 Hb_168978_030 Hb_168978_030 Hb_001205_120--Hb_168978_030 Hb_020378_030 Hb_020378_030 Hb_000441_220--Hb_020378_030 Hb_012506_030 Hb_012506_030 Hb_000441_220--Hb_012506_030 Hb_001221_080 Hb_001221_080 Hb_000441_220--Hb_001221_080 Hb_013399_020 Hb_013399_020 Hb_000441_220--Hb_013399_020 Hb_004586_220 Hb_004586_220 Hb_000441_220--Hb_004586_220 Hb_007479_040 Hb_007479_040 Hb_002044_150--Hb_007479_040 Hb_004254_090 Hb_004254_090 Hb_002044_150--Hb_004254_090 Hb_026198_070 Hb_026198_070 Hb_002044_150--Hb_026198_070 Hb_002044_150--Hb_168978_030 Hb_000207_050 Hb_000207_050 Hb_002044_150--Hb_000207_050 Hb_000138_100 Hb_000138_100 Hb_002044_150--Hb_000138_100 Hb_000637_150 Hb_000637_150 Hb_001584_140--Hb_000637_150 Hb_000136_110 Hb_000136_110 Hb_001584_140--Hb_000136_110 Hb_001205_250 Hb_001205_250 Hb_001584_140--Hb_001205_250 Hb_001584_140--Hb_000441_220 Hb_001518_080 Hb_001518_080 Hb_001584_140--Hb_001518_080 Hb_006634_070 Hb_006634_070 Hb_023344_120--Hb_006634_070 Hb_000676_250 Hb_000676_250 Hb_023344_120--Hb_000676_250 Hb_006455_120 Hb_006455_120 Hb_023344_120--Hb_006455_120 Hb_027380_130 Hb_027380_130 Hb_023344_120--Hb_027380_130 Hb_011995_010 Hb_011995_010 Hb_023344_120--Hb_011995_010 Hb_005269_070 Hb_005269_070 Hb_023344_120--Hb_005269_070 Hb_009898_050 Hb_009898_050 Hb_000915_260--Hb_009898_050 Hb_002276_170 Hb_002276_170 Hb_000915_260--Hb_002276_170 Hb_001141_020 Hb_001141_020 Hb_000915_260--Hb_001141_020 Hb_000915_260--Hb_168978_030 Hb_006153_070 Hb_006153_070 Hb_000915_260--Hb_006153_070 Hb_000640_170 Hb_000640_170 Hb_168978_030--Hb_000640_170 Hb_000035_470 Hb_000035_470 Hb_168978_030--Hb_000035_470 Hb_000617_180 Hb_000617_180 Hb_168978_030--Hb_000617_180 Hb_105328_020 Hb_105328_020 Hb_168978_030--Hb_105328_020 Hb_000156_010 Hb_000156_010 Hb_168978_030--Hb_000156_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
71.0639 42.4676 85.3633 66.5396 61.4138 78.9178
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
76.2223 45.1184 90.1973 82.2849 75.0556

CAGE analysis