Hb_001205_140

Information

Type -
Description -
Location Contig1205: 96951-100660
Sequence    

Annotation

kegg
ID rcu:RCOM_0536900
description cytochrome P450, putative (EC:1.14.13.76)
nr
ID XP_012073892.1
description PREDICTED: cytochrome P450 90B1 [Jatropha curcas]
swissprot
ID O64989
description Cytochrome P450 90B1 OS=Arabidopsis thaliana GN=CYP90B1 PE=1 SV=2
trembl
ID B9S6I4
description Cytochrome P450, putative OS=Ricinus communis GN=RCOM_0536900 PE=3 SV=1
Gene Ontology
ID GO:0005783
description cytochrome p450 90b1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06334: 96615-100648 , PASA_asmbl_06335: 97395-97578 , PASA_asmbl_06336: 98485-100648
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001205_140 0.0 - - PREDICTED: cytochrome P450 90B1 [Jatropha curcas]
2 Hb_001789_220 0.033380543 - - PREDICTED: BAHD acyltransferase DCR-like [Jatropha curcas]
3 Hb_006117_030 0.041013785 - - conserved hypothetical protein [Ricinus communis]
4 Hb_145502_010 0.0434060719 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82-like [Jatropha curcas]
5 Hb_000018_110 0.0479740917 - - hypothetical protein POPTR_0018s00370g [Populus trichocarpa]
6 Hb_003598_070 0.0527395843 - - conserved hypothetical protein [Ricinus communis]
7 Hb_147976_010 0.0537462545 - - -
8 Hb_002042_090 0.0545006962 - - PREDICTED: root phototropism protein 3-like [Jatropha curcas]
9 Hb_002284_290 0.0547971929 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
10 Hb_000834_160 0.055317313 - - hypothetical protein JCGZ_07239 [Jatropha curcas]
11 Hb_014056_020 0.0566459265 - - zinc finger protein, putative [Ricinus communis]
12 Hb_005345_020 0.0568968308 - - Root phototropism protein, putative [Ricinus communis]
13 Hb_013394_070 0.0595289108 - - hypothetical protein POPTR_0013s12090g [Populus trichocarpa]
14 Hb_031862_210 0.0595416635 - - hypothetical protein JCGZ_24955 [Jatropha curcas]
15 Hb_002965_170 0.0597708631 transcription factor TF Family: MYB PREDICTED: myb-related protein P [Jatropha curcas]
16 Hb_000915_210 0.0605112133 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000142_050 0.0653760568 - - PREDICTED: beta-glucosidase 18-like isoform X1 [Populus euphratica]
18 Hb_001675_090 0.0663434952 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
19 Hb_001253_050 0.0671340691 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
20 Hb_009692_050 0.0671867671 - - -

Gene co-expression network

sample Hb_001205_140 Hb_001205_140 Hb_001789_220 Hb_001789_220 Hb_001205_140--Hb_001789_220 Hb_006117_030 Hb_006117_030 Hb_001205_140--Hb_006117_030 Hb_145502_010 Hb_145502_010 Hb_001205_140--Hb_145502_010 Hb_000018_110 Hb_000018_110 Hb_001205_140--Hb_000018_110 Hb_003598_070 Hb_003598_070 Hb_001205_140--Hb_003598_070 Hb_147976_010 Hb_147976_010 Hb_001205_140--Hb_147976_010 Hb_041433_010 Hb_041433_010 Hb_001789_220--Hb_041433_010 Hb_001789_220--Hb_006117_030 Hb_002042_090 Hb_002042_090 Hb_001789_220--Hb_002042_090 Hb_005345_020 Hb_005345_020 Hb_001789_220--Hb_005345_020 Hb_007681_010 Hb_007681_010 Hb_001789_220--Hb_007681_010 Hb_014056_020 Hb_014056_020 Hb_006117_030--Hb_014056_020 Hb_002965_170 Hb_002965_170 Hb_006117_030--Hb_002965_170 Hb_000557_070 Hb_000557_070 Hb_006117_030--Hb_000557_070 Hb_000915_210 Hb_000915_210 Hb_006117_030--Hb_000915_210 Hb_004724_090 Hb_004724_090 Hb_006117_030--Hb_004724_090 Hb_031862_210 Hb_031862_210 Hb_145502_010--Hb_031862_210 Hb_145502_010--Hb_147976_010 Hb_145502_010--Hb_000018_110 Hb_145502_010--Hb_003598_070 Hb_009692_050 Hb_009692_050 Hb_145502_010--Hb_009692_050 Hb_000018_110--Hb_147976_010 Hb_000142_050 Hb_000142_050 Hb_000018_110--Hb_000142_050 Hb_002245_050 Hb_002245_050 Hb_000018_110--Hb_002245_050 Hb_000018_110--Hb_003598_070 Hb_000834_160 Hb_000834_160 Hb_003598_070--Hb_000834_160 Hb_003598_070--Hb_147976_010 Hb_002284_290 Hb_002284_290 Hb_003598_070--Hb_002284_290 Hb_003598_070--Hb_009692_050 Hb_003836_040 Hb_003836_040 Hb_003598_070--Hb_003836_040 Hb_147976_010--Hb_031862_210 Hb_147976_010--Hb_009692_050 Hb_147976_010--Hb_002284_290 Hb_147976_010--Hb_000834_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0324011 7.25264 2.40908 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0279866 5.83195

CAGE analysis