Hb_001205_150

Information

Type -
Description -
Location Contig1205: 108752-111314
Sequence    

Annotation

kegg
ID tcc:TCM_000403
description hypothetical protein
nr
ID XP_007046961.1
description Uncharacterized protein TCM_000403 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061DMC5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_000403 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06337: 105799-109127 , PASA_asmbl_06340: 111032-111321
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001205_150 0.0 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
2 Hb_000692_220 0.0467336431 - - hypothetical protein B456_002G120900 [Gossypium raimondii]
3 Hb_010174_020 0.0583518614 - - protein binding protein, putative [Ricinus communis]
4 Hb_000479_190 0.0686628231 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006429_010 0.0800787417 - - PREDICTED: uncharacterized protein LOC105639724 [Jatropha curcas]
6 Hb_003502_090 0.0805722004 - - ATP synthase subunit d, putative [Ricinus communis]
7 Hb_000161_060 0.0809773944 - - PREDICTED: probable magnesium transporter NIPA4 [Jatropha curcas]
8 Hb_000083_170 0.0816083915 - - PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Populus euphratica]
9 Hb_003092_030 0.0841145627 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
10 Hb_092337_010 0.0849565706 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
11 Hb_001234_100 0.0852990386 - - PREDICTED: eyes absent homolog 2 isoform X1 [Jatropha curcas]
12 Hb_007009_010 0.0861582731 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675 [Populus euphratica]
13 Hb_003671_020 0.0861782032 - - calcineurin B, putative [Ricinus communis]
14 Hb_000125_100 0.0879006836 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105635070 [Jatropha curcas]
15 Hb_000985_060 0.0888336176 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
16 Hb_004705_100 0.0891559068 - - PREDICTED: inactive leucine-rich repeat receptor-like protein kinase CORYNE [Jatropha curcas]
17 Hb_012799_160 0.0894691943 - - PREDICTED: ADP-ribosylation factor-related protein 1-like [Jatropha curcas]
18 Hb_001114_130 0.0916220831 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP-like isoform X1 [Jatropha curcas]
19 Hb_006198_080 0.0924451555 - - hypothetical protein MIMGU_mgv1a013452mg [Erythranthe guttata]
20 Hb_003414_050 0.093004961 - - PREDICTED: uncharacterized protein LOC105640180 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_001205_150 Hb_001205_150 Hb_000692_220 Hb_000692_220 Hb_001205_150--Hb_000692_220 Hb_010174_020 Hb_010174_020 Hb_001205_150--Hb_010174_020 Hb_000479_190 Hb_000479_190 Hb_001205_150--Hb_000479_190 Hb_006429_010 Hb_006429_010 Hb_001205_150--Hb_006429_010 Hb_003502_090 Hb_003502_090 Hb_001205_150--Hb_003502_090 Hb_000161_060 Hb_000161_060 Hb_001205_150--Hb_000161_060 Hb_000692_220--Hb_000479_190 Hb_000692_220--Hb_010174_020 Hb_092337_010 Hb_092337_010 Hb_000692_220--Hb_092337_010 Hb_002375_070 Hb_002375_070 Hb_000692_220--Hb_002375_070 Hb_003125_010 Hb_003125_010 Hb_000692_220--Hb_003125_010 Hb_010174_020--Hb_000479_190 Hb_003671_020 Hb_003671_020 Hb_010174_020--Hb_003671_020 Hb_008300_010 Hb_008300_010 Hb_010174_020--Hb_008300_010 Hb_001461_010 Hb_001461_010 Hb_010174_020--Hb_001461_010 Hb_001584_190 Hb_001584_190 Hb_000479_190--Hb_001584_190 Hb_000985_060 Hb_000985_060 Hb_000479_190--Hb_000985_060 Hb_000479_190--Hb_003502_090 Hb_003108_020 Hb_003108_020 Hb_000479_190--Hb_003108_020 Hb_000363_360 Hb_000363_360 Hb_000479_190--Hb_000363_360 Hb_006429_010--Hb_000479_190 Hb_003092_030 Hb_003092_030 Hb_006429_010--Hb_003092_030 Hb_004218_110 Hb_004218_110 Hb_006429_010--Hb_004218_110 Hb_002759_060 Hb_002759_060 Hb_006429_010--Hb_002759_060 Hb_037887_010 Hb_037887_010 Hb_006429_010--Hb_037887_010 Hb_003502_090--Hb_003108_020 Hb_001234_100 Hb_001234_100 Hb_003502_090--Hb_001234_100 Hb_001268_050 Hb_001268_050 Hb_003502_090--Hb_001268_050 Hb_003605_090 Hb_003605_090 Hb_003502_090--Hb_003605_090 Hb_154948_040 Hb_154948_040 Hb_003502_090--Hb_154948_040 Hb_000629_120 Hb_000629_120 Hb_000161_060--Hb_000629_120 Hb_000161_060--Hb_010174_020 Hb_000161_060--Hb_000692_220 Hb_000161_060--Hb_000985_060 Hb_000161_060--Hb_092337_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.95734 2.61987 2.03132 8.96851 4.49969 8.67468
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.21461 10.5837 10.8336 3.47363 4.40989

CAGE analysis