Hb_001205_240

Information

Type -
Description -
Location Contig1205: 162037-165803
Sequence    

Annotation

kegg
ID pop:POPTR_0007s12640g
description POPTRDRAFT_219145; hypothetical protein
nr
ID XP_012086539.1
description PREDICTED: uncharacterized protein LOC105645528 [Jatropha curcas]
swissprot
ID Q54FD6
description Transcription initiation factor IIB OS=Dictyostelium discoideum GN=gtf2b PE=3 SV=1
trembl
ID A0A067JP25
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24150 PE=4 SV=1
Gene Ontology
ID GO:0009527
description transcription initiation factor iib

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06354: 162105-165801
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001205_240 0.0 - - PREDICTED: uncharacterized protein LOC105645528 [Jatropha curcas]
2 Hb_000028_370 0.0436578314 - - Guanine nucleotide-binding protein alpha-2 subunit [Glycine soja]
3 Hb_003761_010 0.0523319676 - - alcohol dehydrogenase, putative [Ricinus communis]
4 Hb_008725_230 0.0562164823 - - PREDICTED: CTP synthase [Jatropha curcas]
5 Hb_002205_110 0.0562377868 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000732_010 0.0669394458 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
7 Hb_000710_060 0.0670133667 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
8 Hb_004324_130 0.0689076474 - - polypyrimidine tract binding protein, putative [Ricinus communis]
9 Hb_003906_200 0.0692238191 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
10 Hb_065525_040 0.0697044142 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
11 Hb_000185_030 0.0702235854 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
12 Hb_000868_090 0.0713448239 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
13 Hb_003680_120 0.0721012754 - - PREDICTED: E3 ubiquitin-protein ligase UPL7 [Jatropha curcas]
14 Hb_002232_410 0.0724298213 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
15 Hb_000049_210 0.0736171236 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
16 Hb_002078_350 0.07405827 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
17 Hb_168978_010 0.0743067262 - - PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]
18 Hb_002450_020 0.0744673341 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
19 Hb_002110_190 0.0746301773 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
20 Hb_019863_070 0.076204175 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001205_240 Hb_001205_240 Hb_000028_370 Hb_000028_370 Hb_001205_240--Hb_000028_370 Hb_003761_010 Hb_003761_010 Hb_001205_240--Hb_003761_010 Hb_008725_230 Hb_008725_230 Hb_001205_240--Hb_008725_230 Hb_002205_110 Hb_002205_110 Hb_001205_240--Hb_002205_110 Hb_000732_010 Hb_000732_010 Hb_001205_240--Hb_000732_010 Hb_000710_060 Hb_000710_060 Hb_001205_240--Hb_000710_060 Hb_000028_370--Hb_002205_110 Hb_000028_370--Hb_008725_230 Hb_002232_410 Hb_002232_410 Hb_000028_370--Hb_002232_410 Hb_000028_370--Hb_003761_010 Hb_168978_010 Hb_168978_010 Hb_000028_370--Hb_168978_010 Hb_000185_030 Hb_000185_030 Hb_003761_010--Hb_000185_030 Hb_028285_010 Hb_028285_010 Hb_003761_010--Hb_028285_010 Hb_003761_010--Hb_002205_110 Hb_003761_010--Hb_002232_410 Hb_008725_230--Hb_002232_410 Hb_001359_050 Hb_001359_050 Hb_008725_230--Hb_001359_050 Hb_004324_130 Hb_004324_130 Hb_008725_230--Hb_004324_130 Hb_008725_230--Hb_000185_030 Hb_002205_110--Hb_002232_410 Hb_001408_040 Hb_001408_040 Hb_002205_110--Hb_001408_040 Hb_010997_080 Hb_010997_080 Hb_002205_110--Hb_010997_080 Hb_000441_140 Hb_000441_140 Hb_002205_110--Hb_000441_140 Hb_000732_010--Hb_002232_410 Hb_065525_040 Hb_065525_040 Hb_000732_010--Hb_065525_040 Hb_000331_550 Hb_000331_550 Hb_000732_010--Hb_000331_550 Hb_000732_010--Hb_002205_110 Hb_000708_030 Hb_000708_030 Hb_000732_010--Hb_000708_030 Hb_000710_060--Hb_000185_030 Hb_000049_210 Hb_000049_210 Hb_000710_060--Hb_000049_210 Hb_008770_030 Hb_008770_030 Hb_000710_060--Hb_008770_030 Hb_001633_210 Hb_001633_210 Hb_000710_060--Hb_001633_210 Hb_000297_010 Hb_000297_010 Hb_000710_060--Hb_000297_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.92275 9.40447 4.95418 9.47873 5.04375 8.25483
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.20476 8.73684 8.30429 7.7193 6.06101

CAGE analysis