Hb_001205_260

Information

Type -
Description -
Location Contig1205: 179890-181624
Sequence    

Annotation

kegg
ID tcc:TCM_015936
description DWNN domain isoform 1
nr
ID XP_007039788.1
description DWNN domain isoform 2 [Theobroma cacao]
swissprot
ID P97868
description E3 ubiquitin-protein ligase RBBP6 OS=Mus musculus GN=Rbbp6 PE=1 SV=5
trembl
ID A0A061GB76
description DWNN domain isoform 2 OS=Theobroma cacao GN=TCM_015936 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001205_260 0.0 - - DWNN domain isoform 2 [Theobroma cacao]
2 Hb_028447_010 0.0015641132 - - hypothetical protein RCOM_1967580 [Ricinus communis]
3 Hb_004586_100 0.0020510074 - - PREDICTED: uncharacterized protein LOC105120428 isoform X2 [Populus euphratica]
4 Hb_004669_010 0.0033549126 - - hypothetical protein JCGZ_26481 [Jatropha curcas]
5 Hb_003203_010 0.006582651 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
6 Hb_001098_060 0.0091897712 - - -
7 Hb_001140_120 0.0100498693 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
8 Hb_000762_100 0.0103527258 - - PREDICTED: uncharacterized protein LOC102617255 [Citrus sinensis]
9 Hb_007292_040 0.0107824178 - - Plastid developmental protein DAG [Theobroma cacao]
10 Hb_000018_080 0.012900187 - - hypothetical protein JCGZ_07748 [Jatropha curcas]
11 Hb_001158_210 0.0132567928 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002471_030 0.0159091293 - - PREDICTED: cyclin-J18 [Jatropha curcas]
13 Hb_014223_030 0.0163361819 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At4g03220 [Jatropha curcas]
14 Hb_088508_010 0.0171054028 - - cytochrome P450, putative [Ricinus communis]
15 Hb_014776_010 0.0176421095 - - PREDICTED: receptor-like protein kinase 5 [Jatropha curcas]
16 Hb_007138_020 0.0185912859 - - hypothetical protein POPTR_0019s09630g [Populus trichocarpa]
17 Hb_001414_070 0.0187686374 - - Zinc finger protein GIS2 [Medicago truncatula]
18 Hb_128935_010 0.0203116855 - - E3 ubiquitin-protein ligase UPL5 [Glycine soja]
19 Hb_003841_010 0.0206025675 - - -
20 Hb_002292_060 0.0216227669 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]

Gene co-expression network

sample Hb_001205_260 Hb_001205_260 Hb_028447_010 Hb_028447_010 Hb_001205_260--Hb_028447_010 Hb_004586_100 Hb_004586_100 Hb_001205_260--Hb_004586_100 Hb_004669_010 Hb_004669_010 Hb_001205_260--Hb_004669_010 Hb_003203_010 Hb_003203_010 Hb_001205_260--Hb_003203_010 Hb_001098_060 Hb_001098_060 Hb_001205_260--Hb_001098_060 Hb_001140_120 Hb_001140_120 Hb_001205_260--Hb_001140_120 Hb_028447_010--Hb_004586_100 Hb_028447_010--Hb_004669_010 Hb_028447_010--Hb_003203_010 Hb_028447_010--Hb_001098_060 Hb_028447_010--Hb_001140_120 Hb_004586_100--Hb_003203_010 Hb_004586_100--Hb_004669_010 Hb_004586_100--Hb_001098_060 Hb_004586_100--Hb_001140_120 Hb_001158_210 Hb_001158_210 Hb_004669_010--Hb_001158_210 Hb_004669_010--Hb_003203_010 Hb_004669_010--Hb_001098_060 Hb_003203_010--Hb_001098_060 Hb_003203_010--Hb_001140_120 Hb_000762_100 Hb_000762_100 Hb_003203_010--Hb_000762_100 Hb_007292_040 Hb_007292_040 Hb_003203_010--Hb_007292_040 Hb_001098_060--Hb_001140_120 Hb_001098_060--Hb_000762_100 Hb_001098_060--Hb_007292_040 Hb_000018_080 Hb_000018_080 Hb_001098_060--Hb_000018_080 Hb_002471_030 Hb_002471_030 Hb_001098_060--Hb_002471_030 Hb_001140_120--Hb_000762_100 Hb_001140_120--Hb_007292_040 Hb_001140_120--Hb_000018_080 Hb_001140_120--Hb_002471_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0205833 0.0419195 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis