Hb_001205_280

Information

Type -
Description -
Location Contig1205: 186129-187787
Sequence    

Annotation

kegg
ID rcu:RCOM_0066500
description sugar transporter, putative (EC:1.3.1.74)
nr
ID XP_012084471.1
description PREDICTED: probable polyol transporter 6 [Jatropha curcas]
swissprot
ID Q8GXR2
description Probable polyol transporter 6 OS=Arabidopsis thaliana GN=PLT6 PE=2 SV=2
trembl
ID A0A067K5M8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20028 PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable polyol transporter 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06357: 185984-187926
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001205_280 0.0 - - PREDICTED: probable polyol transporter 6 [Jatropha curcas]
2 Hb_023386_070 0.0546757986 - - PREDICTED: probable pectinesterase 68 [Jatropha curcas]
3 Hb_001384_030 0.0637789003 - - PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]
4 Hb_074674_010 0.0678969753 - - Cell division cycle protein cdt2, putative [Ricinus communis]
5 Hb_061361_010 0.0689216143 - - kinase, putative [Ricinus communis]
6 Hb_000025_770 0.071918301 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
7 Hb_000347_310 0.0978307675 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 3-like [Jatropha curcas]
8 Hb_005066_050 0.0979399288 - - -
9 Hb_000176_040 0.1042122688 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR3 isoform X2 [Jatropha curcas]
10 Hb_046204_010 0.1105907546 - - PREDICTED: peroxidase 5-like [Jatropha curcas]
11 Hb_010369_020 0.1108609737 - - hypothetical protein JCGZ_21088 [Jatropha curcas]
12 Hb_003368_070 0.1153587331 - - PREDICTED: uncharacterized protein LOC105109387 [Populus euphratica]
13 Hb_001699_070 0.1256933518 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003018_210 0.1305028648 - - PREDICTED: uncharacterized protein LOC105138721 isoform X2 [Populus euphratica]
15 Hb_000163_020 0.1308504005 - - -
16 Hb_000035_190 0.1345102254 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000422_040 0.1350228195 - - hypothetical protein CICLE_v10013147mg [Citrus clementina]
18 Hb_005141_020 0.1351547341 - - laccase, putative [Ricinus communis]
19 Hb_000890_140 0.1383810976 - - PREDICTED: uncharacterized protein LOC105646185 [Jatropha curcas]
20 Hb_004174_030 0.1438804484 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Populus euphratica]

Gene co-expression network

sample Hb_001205_280 Hb_001205_280 Hb_023386_070 Hb_023386_070 Hb_001205_280--Hb_023386_070 Hb_001384_030 Hb_001384_030 Hb_001205_280--Hb_001384_030 Hb_074674_010 Hb_074674_010 Hb_001205_280--Hb_074674_010 Hb_061361_010 Hb_061361_010 Hb_001205_280--Hb_061361_010 Hb_000025_770 Hb_000025_770 Hb_001205_280--Hb_000025_770 Hb_000347_310 Hb_000347_310 Hb_001205_280--Hb_000347_310 Hb_023386_070--Hb_074674_010 Hb_023386_070--Hb_001384_030 Hb_023386_070--Hb_061361_010 Hb_023386_070--Hb_000025_770 Hb_010369_020 Hb_010369_020 Hb_023386_070--Hb_010369_020 Hb_001384_030--Hb_074674_010 Hb_046204_010 Hb_046204_010 Hb_001384_030--Hb_046204_010 Hb_001384_030--Hb_061361_010 Hb_001384_030--Hb_010369_020 Hb_074674_010--Hb_010369_020 Hb_074674_010--Hb_046204_010 Hb_074674_010--Hb_061361_010 Hb_061361_010--Hb_000025_770 Hb_005066_050 Hb_005066_050 Hb_061361_010--Hb_005066_050 Hb_000621_100 Hb_000621_100 Hb_061361_010--Hb_000621_100 Hb_000025_770--Hb_005066_050 Hb_000025_770--Hb_000621_100 Hb_000025_770--Hb_074674_010 Hb_006452_210 Hb_006452_210 Hb_000347_310--Hb_006452_210 Hb_001817_200 Hb_001817_200 Hb_000347_310--Hb_001817_200 Hb_002259_100 Hb_002259_100 Hb_000347_310--Hb_002259_100 Hb_002391_260 Hb_002391_260 Hb_000347_310--Hb_002391_260 Hb_001571_070 Hb_001571_070 Hb_000347_310--Hb_001571_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 13.0362 6.13384 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0308736 0 0.0456518 1.13419 0

CAGE analysis