Hb_001205_310

Information

Type -
Description -
Location Contig1205: 237926-241429
Sequence    

Annotation

kegg
ID cit:102610443
description inactive TPR repeat-containing thioredoxin TTL3-like
nr
ID XP_012069949.1
description PREDICTED: TPR repeat-containing thioredoxin TTL4-like [Jatropha curcas]
swissprot
ID Q9SIN1
description Inactive TPR repeat-containing thioredoxin TTL3 OS=Arabidopsis thaliana GN=TTL3 PE=1 SV=2
trembl
ID A0A067L7A8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04221 PE=4 SV=1
Gene Ontology
ID GO:0005623
description inactive tpr repeat-containing thioredoxin ttl3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06359: 241105-241349
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001205_310 0.0 - - PREDICTED: TPR repeat-containing thioredoxin TTL4-like [Jatropha curcas]
2 Hb_002304_150 0.0979643729 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
3 Hb_001711_020 0.0993318808 - - PREDICTED: AP-2 complex subunit mu [Jatropha curcas]
4 Hb_002235_250 0.1016168338 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
5 Hb_013726_020 0.1017384994 - - ara4-interacting protein, putative [Ricinus communis]
6 Hb_000869_020 0.1046480719 - - PREDICTED: uncharacterized protein LOC105641036 [Jatropha curcas]
7 Hb_001575_070 0.1056489577 - - PREDICTED: uncharacterized protein LOC105639885 [Jatropha curcas]
8 Hb_000110_310 0.105819094 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
9 Hb_001971_010 0.1077516773 - - F23N19.4 [Arabidopsis thaliana]
10 Hb_000375_350 0.1083294167 - - PREDICTED: uncharacterized protein LOC105641632 [Jatropha curcas]
11 Hb_004060_020 0.1085523879 - - nucleic acid binding protein, putative [Ricinus communis]
12 Hb_005496_140 0.1103380865 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001799_030 0.1103569918 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
14 Hb_002600_090 0.1107076178 - - ATP binding protein, putative [Ricinus communis]
15 Hb_002998_060 0.1112026127 - - PREDICTED: vacuolar protein-sorting-associated protein 33 homolog [Jatropha curcas]
16 Hb_171376_010 0.1114102962 - - PREDICTED: uncharacterized protein LOC105630877 isoform X1 [Jatropha curcas]
17 Hb_001252_130 0.1115186718 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
18 Hb_000094_280 0.1124553232 - - PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]
19 Hb_001357_350 0.1141949665 - - conserved hypothetical protein [Ricinus communis]
20 Hb_017895_040 0.1164274423 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]

Gene co-expression network

sample Hb_001205_310 Hb_001205_310 Hb_002304_150 Hb_002304_150 Hb_001205_310--Hb_002304_150 Hb_001711_020 Hb_001711_020 Hb_001205_310--Hb_001711_020 Hb_002235_250 Hb_002235_250 Hb_001205_310--Hb_002235_250 Hb_013726_020 Hb_013726_020 Hb_001205_310--Hb_013726_020 Hb_000869_020 Hb_000869_020 Hb_001205_310--Hb_000869_020 Hb_001575_070 Hb_001575_070 Hb_001205_310--Hb_001575_070 Hb_001799_030 Hb_001799_030 Hb_002304_150--Hb_001799_030 Hb_012258_010 Hb_012258_010 Hb_002304_150--Hb_012258_010 Hb_006132_090 Hb_006132_090 Hb_002304_150--Hb_006132_090 Hb_000375_350 Hb_000375_350 Hb_002304_150--Hb_000375_350 Hb_000110_310 Hb_000110_310 Hb_002304_150--Hb_000110_310 Hb_003728_060 Hb_003728_060 Hb_002304_150--Hb_003728_060 Hb_000599_250 Hb_000599_250 Hb_001711_020--Hb_000599_250 Hb_004934_100 Hb_004934_100 Hb_001711_020--Hb_004934_100 Hb_001300_150 Hb_001300_150 Hb_001711_020--Hb_001300_150 Hb_002600_090 Hb_002600_090 Hb_001711_020--Hb_002600_090 Hb_001971_010 Hb_001971_010 Hb_001711_020--Hb_001971_010 Hb_001711_020--Hb_000375_350 Hb_005496_140 Hb_005496_140 Hb_002235_250--Hb_005496_140 Hb_000331_260 Hb_000331_260 Hb_002235_250--Hb_000331_260 Hb_002235_250--Hb_001971_010 Hb_000883_020 Hb_000883_020 Hb_002235_250--Hb_000883_020 Hb_000866_010 Hb_000866_010 Hb_002235_250--Hb_000866_010 Hb_002235_250--Hb_000375_350 Hb_000656_040 Hb_000656_040 Hb_013726_020--Hb_000656_040 Hb_002835_240 Hb_002835_240 Hb_013726_020--Hb_002835_240 Hb_000347_540 Hb_000347_540 Hb_013726_020--Hb_000347_540 Hb_000815_320 Hb_000815_320 Hb_013726_020--Hb_000815_320 Hb_002998_060 Hb_002998_060 Hb_013726_020--Hb_002998_060 Hb_002168_060 Hb_002168_060 Hb_013726_020--Hb_002168_060 Hb_003513_010 Hb_003513_010 Hb_000869_020--Hb_003513_010 Hb_004970_190 Hb_004970_190 Hb_000869_020--Hb_004970_190 Hb_004052_080 Hb_004052_080 Hb_000869_020--Hb_004052_080 Hb_003861_060 Hb_003861_060 Hb_000869_020--Hb_003861_060 Hb_007007_120 Hb_007007_120 Hb_000869_020--Hb_007007_120 Hb_005588_080 Hb_005588_080 Hb_000869_020--Hb_005588_080 Hb_024847_010 Hb_024847_010 Hb_001575_070--Hb_024847_010 Hb_004060_020 Hb_004060_020 Hb_001575_070--Hb_004060_020 Hb_001252_130 Hb_001252_130 Hb_001575_070--Hb_001252_130 Hb_009694_010 Hb_009694_010 Hb_001575_070--Hb_009694_010 Hb_082821_010 Hb_082821_010 Hb_001575_070--Hb_082821_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.07924 1.71966 7.13462 7.53132 3.16223 6.36168
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.82087 7.25563 6.81909 3.63644 4.66353

CAGE analysis