Hb_001206_090

Information

Type -
Description -
Location Contig1206: 103541-108412
Sequence    

Annotation

kegg
ID tcc:TCM_029740
description Pyruvate decarboxylase-2 isoform 1
nr
ID AIE47263.1
description pyruvate decarboxylase [Hevea brasiliensis]
swissprot
ID A2XFI3
description Pyruvate decarboxylase 2 OS=Oryza sativa subsp. indica GN=PDC2 PE=2 SV=2
trembl
ID T1LMK9
description Uncharacterized protein OS=Triticum urartu PE=4 SV=1
Gene Ontology
ID GO:0000287
description pyruvate decarboxylase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06411: 103803-103903 , PASA_asmbl_06412: 103968-105509 , PASA_asmbl_06413: 105754-108143
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001206_090 0.0 - - pyruvate decarboxylase [Hevea brasiliensis]
2 Hb_000645_210 0.1563468272 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X2 [Jatropha curcas]
3 Hb_000165_210 0.1656291413 - - PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
4 Hb_127886_010 0.1779438928 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
5 Hb_000098_310 0.186213338 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
6 Hb_000928_040 0.1914157937 - - cytochrome P450, putative [Ricinus communis]
7 Hb_004195_110 0.191788744 - - hypothetical protein JCGZ_24010 [Jatropha curcas]
8 Hb_000120_390 0.1998990334 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
9 Hb_000093_150 0.2003056009 - - 6-phosphogluconolactonase, putative [Ricinus communis]
10 Hb_000915_070 0.202307613 - - ATP binding protein, putative [Ricinus communis]
11 Hb_001946_030 0.2127060464 - - grr1, plant, putative [Ricinus communis]
12 Hb_002304_140 0.2128538321 - - ring finger protein, putative [Ricinus communis]
13 Hb_001114_070 0.2155097679 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g58400 [Jatropha curcas]
14 Hb_000300_130 0.2157124751 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105141503 [Populus euphratica]
15 Hb_007943_160 0.2160789364 - - PREDICTED: aspartate aminotransferase, cytoplasmic [Jatropha curcas]
16 Hb_012545_090 0.2203729759 - - hypothetical protein JCGZ_04320 [Jatropha curcas]
17 Hb_006275_010 0.2205383934 - - PREDICTED: ribulose bisphosphate carboxylase small chain clone 512-like [Jatropha curcas]
18 Hb_000853_060 0.2218723815 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
19 Hb_183623_010 0.2229296721 - - aldo-keto reductase, putative [Ricinus communis]
20 Hb_000556_110 0.2241751267 - - hypothetical protein POPTR_0014s06790g [Populus trichocarpa]

Gene co-expression network

sample Hb_001206_090 Hb_001206_090 Hb_000645_210 Hb_000645_210 Hb_001206_090--Hb_000645_210 Hb_000165_210 Hb_000165_210 Hb_001206_090--Hb_000165_210 Hb_127886_010 Hb_127886_010 Hb_001206_090--Hb_127886_010 Hb_000098_310 Hb_000098_310 Hb_001206_090--Hb_000098_310 Hb_000928_040 Hb_000928_040 Hb_001206_090--Hb_000928_040 Hb_004195_110 Hb_004195_110 Hb_001206_090--Hb_004195_110 Hb_000645_210--Hb_000928_040 Hb_000645_210--Hb_127886_010 Hb_031527_060 Hb_031527_060 Hb_000645_210--Hb_031527_060 Hb_001114_070 Hb_001114_070 Hb_000645_210--Hb_001114_070 Hb_000093_150 Hb_000093_150 Hb_000645_210--Hb_000093_150 Hb_000853_060 Hb_000853_060 Hb_000165_210--Hb_000853_060 Hb_000120_390 Hb_000120_390 Hb_000165_210--Hb_000120_390 Hb_000414_110 Hb_000414_110 Hb_000165_210--Hb_000414_110 Hb_002304_140 Hb_002304_140 Hb_000165_210--Hb_002304_140 Hb_000879_190 Hb_000879_190 Hb_000165_210--Hb_000879_190 Hb_006717_070 Hb_006717_070 Hb_127886_010--Hb_006717_070 Hb_000227_040 Hb_000227_040 Hb_127886_010--Hb_000227_040 Hb_000395_220 Hb_000395_220 Hb_127886_010--Hb_000395_220 Hb_001780_150 Hb_001780_150 Hb_127886_010--Hb_001780_150 Hb_011287_010 Hb_011287_010 Hb_127886_010--Hb_011287_010 Hb_009823_010 Hb_009823_010 Hb_000098_310--Hb_009823_010 Hb_011200_020 Hb_011200_020 Hb_000098_310--Hb_011200_020 Hb_003576_050 Hb_003576_050 Hb_000098_310--Hb_003576_050 Hb_000181_160 Hb_000181_160 Hb_000098_310--Hb_000181_160 Hb_001408_050 Hb_001408_050 Hb_000098_310--Hb_001408_050 Hb_031042_030 Hb_031042_030 Hb_000098_310--Hb_031042_030 Hb_000928_040--Hb_003576_050 Hb_003517_020 Hb_003517_020 Hb_000928_040--Hb_003517_020 Hb_000367_310 Hb_000367_310 Hb_000928_040--Hb_000367_310 Hb_007919_040 Hb_007919_040 Hb_000928_040--Hb_007919_040 Hb_000928_040--Hb_000093_150 Hb_000670_110 Hb_000670_110 Hb_004195_110--Hb_000670_110 Hb_001248_030 Hb_001248_030 Hb_004195_110--Hb_001248_030 Hb_004195_110--Hb_002304_140 Hb_004657_040 Hb_004657_040 Hb_004195_110--Hb_004657_040 Hb_007416_150 Hb_007416_150 Hb_004195_110--Hb_007416_150 Hb_004195_110--Hb_000181_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.446975 8.32856 2.62199 4.74941 0.842895 1.90541
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.4128 3.46061 4.8989 33.0278 0.999981

CAGE analysis