Hb_001208_030

Information

Type -
Description -
Location Contig1208: 28934-35653
Sequence    

Annotation

kegg
ID rcu:RCOM_0320290
description hypothetical protein
nr
ID XP_002534340.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O23193
description CBS domain-containing protein CBSX1, chloroplastic OS=Arabidopsis thaliana GN=CBSX1 PE=1 SV=2
trembl
ID B9T7X1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0320290 PE=4 SV=1
Gene Ontology
ID GO:0005623
description cbs domain-containing protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06421: 28564-45980
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001208_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001208_040 0.101397632 - - hypothetical protein CISIN_1g025613mg [Citrus sinensis]
3 Hb_145880_020 0.1213393548 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
4 Hb_002154_110 0.1333868708 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
5 Hb_008642_030 0.133783862 - - PREDICTED: UMP-CMP kinase 3 isoform X1 [Jatropha curcas]
6 Hb_076219_010 0.1370801996 - - PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Jatropha curcas]
7 Hb_175933_010 0.1382661962 - - NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Ricinus communis]
8 Hb_000563_200 0.1418507254 - - hypothetical protein JCGZ_18930 [Jatropha curcas]
9 Hb_002631_260 0.1480414658 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
10 Hb_001410_060 0.1556075054 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
11 Hb_008206_100 0.1579321205 - - PREDICTED: uncharacterized protein LOC105638302 [Jatropha curcas]
12 Hb_003894_080 0.1587064142 - - PREDICTED: protein cornichon homolog 4 [Vitis vinifera]
13 Hb_001865_090 0.1594617714 - - hypothetical protein VITISV_005773 [Vitis vinifera]
14 Hb_005144_010 0.161088283 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
15 Hb_003103_010 0.1613825746 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003880_040 0.1616614656 - - hypothetical protein POPTR_0001s30770g [Populus trichocarpa]
17 Hb_006452_110 0.1622246465 - - Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative [Ricinus communis]
18 Hb_000240_120 0.1622646587 - - ras-related protein Rab-5B [Reticulomyxa filosa]
19 Hb_166574_010 0.1661721458 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
20 Hb_000016_170 0.1668491805 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001208_030 Hb_001208_030 Hb_001208_040 Hb_001208_040 Hb_001208_030--Hb_001208_040 Hb_145880_020 Hb_145880_020 Hb_001208_030--Hb_145880_020 Hb_002154_110 Hb_002154_110 Hb_001208_030--Hb_002154_110 Hb_008642_030 Hb_008642_030 Hb_001208_030--Hb_008642_030 Hb_076219_010 Hb_076219_010 Hb_001208_030--Hb_076219_010 Hb_175933_010 Hb_175933_010 Hb_001208_030--Hb_175933_010 Hb_002960_130 Hb_002960_130 Hb_001208_040--Hb_002960_130 Hb_000217_020 Hb_000217_020 Hb_001208_040--Hb_000217_020 Hb_000016_060 Hb_000016_060 Hb_001208_040--Hb_000016_060 Hb_006452_110 Hb_006452_110 Hb_001208_040--Hb_006452_110 Hb_007390_020 Hb_007390_020 Hb_001208_040--Hb_007390_020 Hb_000563_200 Hb_000563_200 Hb_145880_020--Hb_000563_200 Hb_001410_060 Hb_001410_060 Hb_145880_020--Hb_001410_060 Hb_148209_010 Hb_148209_010 Hb_145880_020--Hb_148209_010 Hb_000110_120 Hb_000110_120 Hb_145880_020--Hb_000110_120 Hb_002303_060 Hb_002303_060 Hb_145880_020--Hb_002303_060 Hb_004627_030 Hb_004627_030 Hb_145880_020--Hb_004627_030 Hb_003103_010 Hb_003103_010 Hb_002154_110--Hb_003103_010 Hb_002154_110--Hb_008642_030 Hb_000016_170 Hb_000016_170 Hb_002154_110--Hb_000016_170 Hb_002154_110--Hb_000563_200 Hb_006573_290 Hb_006573_290 Hb_002154_110--Hb_006573_290 Hb_002154_110--Hb_145880_020 Hb_158163_010 Hb_158163_010 Hb_008642_030--Hb_158163_010 Hb_008642_030--Hb_003103_010 Hb_008642_030--Hb_000563_200 Hb_008642_030--Hb_000016_170 Hb_005167_030 Hb_005167_030 Hb_008642_030--Hb_005167_030 Hb_076219_010--Hb_145880_020 Hb_076219_010--Hb_001410_060 Hb_000377_120 Hb_000377_120 Hb_076219_010--Hb_000377_120 Hb_000077_180 Hb_000077_180 Hb_076219_010--Hb_000077_180 Hb_005306_070 Hb_005306_070 Hb_076219_010--Hb_005306_070 Hb_000240_120 Hb_000240_120 Hb_175933_010--Hb_000240_120 Hb_008206_100 Hb_008206_100 Hb_175933_010--Hb_008206_100 Hb_032972_010 Hb_032972_010 Hb_175933_010--Hb_032972_010 Hb_175933_010--Hb_001208_040 Hb_001969_020 Hb_001969_020 Hb_175933_010--Hb_001969_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.88654 0.963742 8.84909 41.5023 4.35597 9.65972
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.7308 27.9731 13.1065 12.9363 8.87316

CAGE analysis