Hb_001208_040

Information

Type -
Description -
Location Contig1208: 44516-46016
Sequence    

Annotation

kegg
ID cic:CICLE_v10026357mg
description hypothetical protein
nr
ID KDO79122.1
description hypothetical protein CISIN_1g025613mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067GUL6
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025613mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06421: 28564-45980
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001208_040 0.0 - - hypothetical protein CISIN_1g025613mg [Citrus sinensis]
2 Hb_001208_030 0.101397632 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002960_130 0.1291057541 - - hypothetical protein B456_008G036100 [Gossypium raimondii]
4 Hb_000217_020 0.136698602 - - AMME syndrome candidateprotein 1 protein, putative [Ricinus communis]
5 Hb_000016_060 0.1377046926 - - mads box protein, putative [Ricinus communis]
6 Hb_006452_110 0.1429741464 - - Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative [Ricinus communis]
7 Hb_007390_020 0.1457558894 - - PREDICTED: protein FMP32, mitochondrial-like [Populus euphratica]
8 Hb_001584_240 0.1472153043 - - ADP-ribosylation factor [Gossypium barbadense]
9 Hb_175933_010 0.1524269499 - - NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Ricinus communis]
10 Hb_002073_010 0.1533488008 - - -
11 Hb_005144_010 0.1535546107 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
12 Hb_005000_330 0.154043302 - - conserved hypothetical protein [Ricinus communis]
13 Hb_076219_010 0.1543556467 - - PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Jatropha curcas]
14 Hb_002477_010 0.1551729443 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000110_120 0.1562012199 - - PREDICTED: ras-related protein RABE1a [Fragaria vesca subsp. vesca]
16 Hb_004230_020 0.1577139473 - - PREDICTED: uncharacterized protein LOC105648105 [Jatropha curcas]
17 Hb_145880_020 0.160301477 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
18 Hb_003994_020 0.1610670724 - - -
19 Hb_019181_030 0.1618125001 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]
20 Hb_004176_070 0.1622487878 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001208_040 Hb_001208_040 Hb_001208_030 Hb_001208_030 Hb_001208_040--Hb_001208_030 Hb_002960_130 Hb_002960_130 Hb_001208_040--Hb_002960_130 Hb_000217_020 Hb_000217_020 Hb_001208_040--Hb_000217_020 Hb_000016_060 Hb_000016_060 Hb_001208_040--Hb_000016_060 Hb_006452_110 Hb_006452_110 Hb_001208_040--Hb_006452_110 Hb_007390_020 Hb_007390_020 Hb_001208_040--Hb_007390_020 Hb_145880_020 Hb_145880_020 Hb_001208_030--Hb_145880_020 Hb_002154_110 Hb_002154_110 Hb_001208_030--Hb_002154_110 Hb_008642_030 Hb_008642_030 Hb_001208_030--Hb_008642_030 Hb_076219_010 Hb_076219_010 Hb_001208_030--Hb_076219_010 Hb_175933_010 Hb_175933_010 Hb_001208_030--Hb_175933_010 Hb_019181_030 Hb_019181_030 Hb_002960_130--Hb_019181_030 Hb_001747_030 Hb_001747_030 Hb_002960_130--Hb_001747_030 Hb_000683_100 Hb_000683_100 Hb_002960_130--Hb_000683_100 Hb_001584_240 Hb_001584_240 Hb_002960_130--Hb_001584_240 Hb_002960_130--Hb_000217_020 Hb_000392_340 Hb_000392_340 Hb_000217_020--Hb_000392_340 Hb_000217_020--Hb_019181_030 Hb_001951_130 Hb_001951_130 Hb_000217_020--Hb_001951_130 Hb_004032_030 Hb_004032_030 Hb_000217_020--Hb_004032_030 Hb_001969_020 Hb_001969_020 Hb_000016_060--Hb_001969_020 Hb_000023_290 Hb_000023_290 Hb_000016_060--Hb_000023_290 Hb_148130_020 Hb_148130_020 Hb_000016_060--Hb_148130_020 Hb_006153_030 Hb_006153_030 Hb_000016_060--Hb_006153_030 Hb_002562_110 Hb_002562_110 Hb_000016_060--Hb_002562_110 Hb_000016_060--Hb_002960_130 Hb_000733_080 Hb_000733_080 Hb_006452_110--Hb_000733_080 Hb_003894_080 Hb_003894_080 Hb_006452_110--Hb_003894_080 Hb_000130_100 Hb_000130_100 Hb_006452_110--Hb_000130_100 Hb_005000_330 Hb_005000_330 Hb_006452_110--Hb_005000_330 Hb_012340_050 Hb_012340_050 Hb_006452_110--Hb_012340_050 Hb_001163_040 Hb_001163_040 Hb_006452_110--Hb_001163_040 Hb_007390_020--Hb_019181_030 Hb_000152_600 Hb_000152_600 Hb_007390_020--Hb_000152_600 Hb_005054_220 Hb_005054_220 Hb_007390_020--Hb_005054_220 Hb_000913_040 Hb_000913_040 Hb_007390_020--Hb_000913_040 Hb_004176_070 Hb_004176_070 Hb_007390_020--Hb_004176_070 Hb_010368_050 Hb_010368_050 Hb_007390_020--Hb_010368_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.1402 1.55836 9.69369 33.3564 3.18445 7.90737
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8541 20.3403 5.46602 9.91258 5.35298

CAGE analysis