Hb_001210_060

Information

Type -
Description -
Location Contig1210: 35389-42915
Sequence    

Annotation

kegg
ID rcu:RCOM_1016560
description ATP-binding cassette transporter, putative (EC:3.6.3.41)
nr
ID XP_012073279.1
description PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
swissprot
ID Q76CU2
description Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1
trembl
ID A0A067KLP0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06217 PE=4 SV=1
Gene Ontology
ID GO:0016020
description pleiotropic drug resistance protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06471: 35315-35487 , PASA_asmbl_06472: 35641-36066 , PASA_asmbl_06473: 36339-37269 , PASA_asmbl_06474: 38087-38425 , PASA_asmbl_06475: 38949-39385 , PASA_asmbl_06476: 39532-41568 , PASA_asmbl_06477: 41604-41738 , PASA_asmbl_06478: 41855-42791
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001210_060 0.0 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
2 Hb_000847_030 0.0818759778 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 2 [Jatropha curcas]
3 Hb_003018_150 0.0856652834 - - PREDICTED: uncharacterized protein LOC105628869 [Jatropha curcas]
4 Hb_002246_030 0.0890611893 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
5 Hb_000329_440 0.091610553 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
6 Hb_027472_060 0.0946631497 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
7 Hb_000103_130 0.0948638386 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
8 Hb_001047_210 0.0977076755 - - PSI reaction center subunit II [Citrus sinensis]
9 Hb_002818_150 0.0990888779 transcription factor TF Family: MYB hypothetical protein POPTR_0014s10680g [Populus trichocarpa]
10 Hb_000031_180 0.0992959482 - - sarcosine oxidase, putative [Ricinus communis]
11 Hb_005569_010 0.1013821454 - - Heme-binding protein, putative [Ricinus communis]
12 Hb_000599_150 0.1014006515 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
13 Hb_000076_060 0.101447942 - - hypothetical protein RCOM_0586940 [Ricinus communis]
14 Hb_005694_120 0.1024147758 - - PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type [Jatropha curcas]
15 Hb_003058_170 0.1024193843 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
16 Hb_005914_160 0.1029461485 - - PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic [Jatropha curcas]
17 Hb_001538_080 0.1041441038 - - PREDICTED: QWRF motif-containing protein 2 isoform X2 [Jatropha curcas]
18 Hb_004835_020 0.1052039839 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
19 Hb_005694_160 0.1057510055 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000083_210 0.1063386167 - - Major facilitator superfamily protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_001210_060 Hb_001210_060 Hb_000847_030 Hb_000847_030 Hb_001210_060--Hb_000847_030 Hb_003018_150 Hb_003018_150 Hb_001210_060--Hb_003018_150 Hb_002246_030 Hb_002246_030 Hb_001210_060--Hb_002246_030 Hb_000329_440 Hb_000329_440 Hb_001210_060--Hb_000329_440 Hb_027472_060 Hb_027472_060 Hb_001210_060--Hb_027472_060 Hb_000103_130 Hb_000103_130 Hb_001210_060--Hb_000103_130 Hb_005694_120 Hb_005694_120 Hb_000847_030--Hb_005694_120 Hb_000847_030--Hb_003018_150 Hb_000618_110 Hb_000618_110 Hb_000847_030--Hb_000618_110 Hb_000984_160 Hb_000984_160 Hb_000847_030--Hb_000984_160 Hb_001946_120 Hb_001946_120 Hb_000847_030--Hb_001946_120 Hb_005914_160 Hb_005914_160 Hb_003018_150--Hb_005914_160 Hb_003058_170 Hb_003058_170 Hb_003018_150--Hb_003058_170 Hb_020141_030 Hb_020141_030 Hb_003018_150--Hb_020141_030 Hb_003018_150--Hb_000618_110 Hb_102179_010 Hb_102179_010 Hb_002246_030--Hb_102179_010 Hb_005694_160 Hb_005694_160 Hb_002246_030--Hb_005694_160 Hb_001047_210 Hb_001047_210 Hb_002246_030--Hb_001047_210 Hb_000500_240 Hb_000500_240 Hb_002246_030--Hb_000500_240 Hb_004835_020 Hb_004835_020 Hb_002246_030--Hb_004835_020 Hb_026549_060 Hb_026549_060 Hb_002246_030--Hb_026549_060 Hb_000520_040 Hb_000520_040 Hb_000329_440--Hb_000520_040 Hb_001098_040 Hb_001098_040 Hb_000329_440--Hb_001098_040 Hb_000329_440--Hb_000500_240 Hb_000329_440--Hb_004835_020 Hb_000329_440--Hb_102179_010 Hb_000329_440--Hb_005694_160 Hb_004032_280 Hb_004032_280 Hb_027472_060--Hb_004032_280 Hb_000031_180 Hb_000031_180 Hb_027472_060--Hb_000031_180 Hb_005842_010 Hb_005842_010 Hb_027472_060--Hb_005842_010 Hb_000329_780 Hb_000329_780 Hb_027472_060--Hb_000329_780 Hb_002572_040 Hb_002572_040 Hb_027472_060--Hb_002572_040 Hb_000599_150 Hb_000599_150 Hb_027472_060--Hb_000599_150 Hb_002613_040 Hb_002613_040 Hb_000103_130--Hb_002613_040 Hb_001699_080 Hb_001699_080 Hb_000103_130--Hb_001699_080 Hb_001538_080 Hb_001538_080 Hb_000103_130--Hb_001538_080 Hb_163950_050 Hb_163950_050 Hb_000103_130--Hb_163950_050 Hb_004032_190 Hb_004032_190 Hb_000103_130--Hb_004032_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0735122 1.79684 7.90327 10.8389 0.0196923 0.0553148
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.197432 0.214566 0.213485 0.811305 16.1684

CAGE analysis