Hb_001213_010

Information

Type -
Description -
Location Contig1213: 32416-34666
Sequence    

Annotation

kegg
ID pop:POPTR_0006s09520g
description POPTRDRAFT_560853; laccase family protein
nr
ID XP_012087960.1
description PREDICTED: laccase-7 [Jatropha curcas]
swissprot
ID Q9SR40
description Laccase-7 OS=Arabidopsis thaliana GN=LAC7 PE=2 SV=1
trembl
ID A0A067JKU4
description Laccase OS=Jatropha curcas GN=JCGZ_25081 PE=3 SV=1
Gene Ontology
ID GO:0005507
description laccase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001213_010 0.0 - - PREDICTED: laccase-7 [Jatropha curcas]
2 Hb_054102_010 0.0057910606 - - abhydrolase domain containing, putative [Ricinus communis]
3 Hb_148383_010 0.0185918179 - - PREDICTED: protein YLS9 [Jatropha curcas]
4 Hb_000720_010 0.0299737661 - - Lignin-forming anionic peroxidase precursor, putative [Ricinus communis]
5 Hb_000576_080 0.0301930964 - - conserved hypothetical protein [Ricinus communis]
6 Hb_011161_060 0.0577020405 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein [Jatropha curcas]
7 Hb_000671_010 0.0608765987 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
8 Hb_002757_050 0.0724205002 - - PREDICTED: O-acyltransferase WSD1-like isoform X1 [Populus euphratica]
9 Hb_006153_190 0.0854046369 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
10 Hb_000205_290 0.088198068 - - -
11 Hb_000115_180 0.0957146758 - - hypothetical protein RCOM_1308310 [Ricinus communis]
12 Hb_126535_010 0.0966660344 - - hypothetical protein JCGZ_09554 [Jatropha curcas]
13 Hb_001863_050 0.0991155361 - - PREDICTED: wall-associated receptor kinase-like 8 [Jatropha curcas]
14 Hb_175167_020 0.0997532069 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006142_010 0.1053601843 - - hypothetical protein CICLE_v10013815mg, partial [Citrus clementina]
16 Hb_000948_040 0.1156078963 - - PREDICTED: germin-like protein subfamily 1 member 13 [Jatropha curcas]
17 Hb_001901_040 0.1194814861 - - hypothetical protein CARUB_v10027638mg [Capsella rubella]
18 Hb_009545_040 0.1239048669 - - conserved hypothetical protein [Ricinus communis]
19 Hb_124247_030 0.1246564238 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Jatropha curcas]
20 Hb_002231_140 0.126791106 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]

Gene co-expression network

sample Hb_001213_010 Hb_001213_010 Hb_054102_010 Hb_054102_010 Hb_001213_010--Hb_054102_010 Hb_148383_010 Hb_148383_010 Hb_001213_010--Hb_148383_010 Hb_000720_010 Hb_000720_010 Hb_001213_010--Hb_000720_010 Hb_000576_080 Hb_000576_080 Hb_001213_010--Hb_000576_080 Hb_011161_060 Hb_011161_060 Hb_001213_010--Hb_011161_060 Hb_000671_010 Hb_000671_010 Hb_001213_010--Hb_000671_010 Hb_054102_010--Hb_148383_010 Hb_054102_010--Hb_000576_080 Hb_054102_010--Hb_000720_010 Hb_054102_010--Hb_011161_060 Hb_054102_010--Hb_000671_010 Hb_148383_010--Hb_000576_080 Hb_148383_010--Hb_000720_010 Hb_148383_010--Hb_011161_060 Hb_000115_180 Hb_000115_180 Hb_148383_010--Hb_000115_180 Hb_000720_010--Hb_011161_060 Hb_000720_010--Hb_000671_010 Hb_002757_050 Hb_002757_050 Hb_000720_010--Hb_002757_050 Hb_000576_080--Hb_000720_010 Hb_000576_080--Hb_000115_180 Hb_001863_050 Hb_001863_050 Hb_000576_080--Hb_001863_050 Hb_011161_060--Hb_000671_010 Hb_011161_060--Hb_002757_050 Hb_000205_290 Hb_000205_290 Hb_011161_060--Hb_000205_290 Hb_000948_040 Hb_000948_040 Hb_011161_060--Hb_000948_040 Hb_000671_010--Hb_002757_050 Hb_000671_010--Hb_000205_290 Hb_000671_010--Hb_000948_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0122869 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0704981 0

CAGE analysis