Hb_001213_040

Information

Type -
Description -
Location Contig1213: 74238-76436
Sequence    

Annotation

kegg
ID rcu:RCOM_0086620
description fructose-1,6-bisphosphatase, putative (EC:1.3.1.74)
nr
ID XP_002527886.1
description fructose-1,6-bisphosphatase, putative [Ricinus communis]
swissprot
ID P46275
description Fructose-1,6-bisphosphatase, chloroplastic OS=Pisum sativum GN=FBP PE=1 SV=2
trembl
ID B9SPG7
description Fructose-1,6-bisphosphatase, putative OS=Ricinus communis GN=RCOM_0086620 PE=3 SV=1
Gene Ontology
ID GO:0042132
description fructose- - chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06516: 74262-76333
cDNA
(Sanger)
(ID:Location)		 011_G18.ab1: 74262-75584 , 014_J12.ab1: 74262-75548

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001213_040 0.0 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
2 Hb_000069_500 0.1218506793 - - PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Jatropha curcas]
3 Hb_000992_020 0.1474830687 - - monoxygenase, putative [Ricinus communis]
4 Hb_034507_050 0.1568897763 - - PREDICTED: uncharacterized protein LOC105646633 isoform X2 [Jatropha curcas]
5 Hb_000574_320 0.1583061195 - - hypothetical protein CICLE_v10024937mg [Citrus clementina]
6 Hb_024066_040 0.1665315316 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
7 Hb_000215_230 0.1720496825 - - PREDICTED: uncharacterized protein LOC105637821 [Jatropha curcas]
8 Hb_005288_180 0.1722501101 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_000031_230 0.1724310056 - - PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]
10 Hb_010174_100 0.17673004 - - PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica]
11 Hb_006940_020 0.1773486311 - - polyprotein [Oryza australiensis]
12 Hb_140389_010 0.1850577034 - - Ran GTPase binding protein, putative [Ricinus communis]
13 Hb_001377_060 0.1850932147 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01030, mitochondrial [Jatropha curcas]
14 Hb_008092_050 0.186060632 - - PREDICTED: uncharacterized protein LOC105142434 [Populus euphratica]
15 Hb_000997_100 0.189068056 - - PREDICTED: uncharacterized protein LOC105632094 isoform X2 [Jatropha curcas]
16 Hb_000906_070 0.1929821341 - - PREDICTED: protein SCAR2-like isoform X1 [Jatropha curcas]
17 Hb_000042_050 0.19420971 - - PREDICTED: uncharacterized protein LOC105632791 isoform X1 [Jatropha curcas]
18 Hb_002030_050 0.1945911473 - - classical arabinogalactan protein 7 precursor [Jatropha curcas]
19 Hb_017043_030 0.1948696022 - - hypothetical protein CISIN_1g011604mg [Citrus sinensis]
20 Hb_000976_130 0.1967286498 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001213_040 Hb_001213_040 Hb_000069_500 Hb_000069_500 Hb_001213_040--Hb_000069_500 Hb_000992_020 Hb_000992_020 Hb_001213_040--Hb_000992_020 Hb_034507_050 Hb_034507_050 Hb_001213_040--Hb_034507_050 Hb_000574_320 Hb_000574_320 Hb_001213_040--Hb_000574_320 Hb_024066_040 Hb_024066_040 Hb_001213_040--Hb_024066_040 Hb_000215_230 Hb_000215_230 Hb_001213_040--Hb_000215_230 Hb_000069_500--Hb_000574_320 Hb_005015_020 Hb_005015_020 Hb_000069_500--Hb_005015_020 Hb_000069_500--Hb_024066_040 Hb_005288_180 Hb_005288_180 Hb_000069_500--Hb_005288_180 Hb_140389_010 Hb_140389_010 Hb_000069_500--Hb_140389_010 Hb_000906_070 Hb_000906_070 Hb_000992_020--Hb_000906_070 Hb_001087_010 Hb_001087_010 Hb_000992_020--Hb_001087_010 Hb_000251_050 Hb_000251_050 Hb_000992_020--Hb_000251_050 Hb_000992_020--Hb_000069_500 Hb_003020_300 Hb_003020_300 Hb_000992_020--Hb_003020_300 Hb_000056_110 Hb_000056_110 Hb_034507_050--Hb_000056_110 Hb_010174_100 Hb_010174_100 Hb_034507_050--Hb_010174_100 Hb_000787_210 Hb_000787_210 Hb_034507_050--Hb_000787_210 Hb_034507_050--Hb_024066_040 Hb_001252_030 Hb_001252_030 Hb_034507_050--Hb_001252_030 Hb_000103_230 Hb_000103_230 Hb_034507_050--Hb_000103_230 Hb_000574_320--Hb_140389_010 Hb_011472_050 Hb_011472_050 Hb_000574_320--Hb_011472_050 Hb_006277_080 Hb_006277_080 Hb_000574_320--Hb_006277_080 Hb_000556_070 Hb_000556_070 Hb_000574_320--Hb_000556_070 Hb_002030_050 Hb_002030_050 Hb_000574_320--Hb_002030_050 Hb_000107_090 Hb_000107_090 Hb_024066_040--Hb_000107_090 Hb_002811_050 Hb_002811_050 Hb_024066_040--Hb_002811_050 Hb_024066_040--Hb_000787_210 Hb_004117_370 Hb_004117_370 Hb_024066_040--Hb_004117_370 Hb_000215_230--Hb_024066_040 Hb_001195_250 Hb_001195_250 Hb_000215_230--Hb_001195_250 Hb_000215_230--Hb_000574_320 Hb_003786_010 Hb_003786_010 Hb_000215_230--Hb_003786_010 Hb_000215_230--Hb_000069_500 Hb_000891_010 Hb_000891_010 Hb_000215_230--Hb_000891_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.963652 2.71649 3.28672 2.12129 1.25801 1.17332
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.117013 0.04603 0 0.403909 8.25239

CAGE analysis