Hb_001213_060

Information

Type -
Description -
Location Contig1213: 91417-94016
Sequence    

Annotation

kegg
ID tcc:TCM_021789
description DNA double-strand break repair rad50 ATPase, putative isoform 1
nr
ID XP_012087954.1
description PREDICTED: uncharacterized protein LOC105646662 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JKU0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25076 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06520: 91331-91947 , PASA_asmbl_06521: 92038-92327 , PASA_asmbl_06522: 92346-92837
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001213_060 0.0 - - PREDICTED: uncharacterized protein LOC105646662 [Jatropha curcas]
2 Hb_085829_010 0.1063082614 - - PREDICTED: homeobox protein 2-like [Jatropha curcas]
3 Hb_000334_090 0.1216803694 - - hypothetical protein JCGZ_16789 [Jatropha curcas]
4 Hb_003427_030 0.1218246278 - - -
5 Hb_000789_160 0.1218937792 - - PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat extensin-like protein 4 [Jatropha curcas]
6 Hb_000207_060 0.1256414951 - - PREDICTED: uncharacterized protein LOC105634368 [Jatropha curcas]
7 Hb_034713_010 0.1259854463 - - PREDICTED: uncharacterized protein LOC105133378 [Populus euphratica]
8 Hb_058471_020 0.128523593 - - PREDICTED: expansin-B3-like [Jatropha curcas]
9 Hb_000062_280 0.1285332246 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
10 Hb_009367_070 0.1285762996 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
11 Hb_004705_060 0.1302903815 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
12 Hb_000853_250 0.1312205839 - - Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis]
13 Hb_000071_040 0.1337023579 - - hypothetical protein POPTR_0001s24580g [Populus trichocarpa]
14 Hb_000017_250 0.1341625915 - - PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Jatropha curcas]
15 Hb_001635_140 0.1343074944 - - protein with unknown function [Ricinus communis]
16 Hb_000086_510 0.1370356803 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
17 Hb_000331_630 0.1411673198 - - hypothetical protein B456_008G203900 [Gossypium raimondii]
18 Hb_002224_020 0.1437265814 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
19 Hb_000506_050 0.1438418092 - - PREDICTED: thymidine kinase [Jatropha curcas]
20 Hb_149882_010 0.14515955 - - PREDICTED: probable receptor protein kinase TMK1 [Populus euphratica]

Gene co-expression network

sample Hb_001213_060 Hb_001213_060 Hb_085829_010 Hb_085829_010 Hb_001213_060--Hb_085829_010 Hb_000334_090 Hb_000334_090 Hb_001213_060--Hb_000334_090 Hb_003427_030 Hb_003427_030 Hb_001213_060--Hb_003427_030 Hb_000789_160 Hb_000789_160 Hb_001213_060--Hb_000789_160 Hb_000207_060 Hb_000207_060 Hb_001213_060--Hb_000207_060 Hb_034713_010 Hb_034713_010 Hb_001213_060--Hb_034713_010 Hb_000086_510 Hb_000086_510 Hb_085829_010--Hb_000086_510 Hb_004705_060 Hb_004705_060 Hb_085829_010--Hb_004705_060 Hb_085829_010--Hb_000334_090 Hb_000017_250 Hb_000017_250 Hb_085829_010--Hb_000017_250 Hb_000853_250 Hb_000853_250 Hb_085829_010--Hb_000853_250 Hb_000813_020 Hb_000813_020 Hb_000334_090--Hb_000813_020 Hb_000334_090--Hb_000086_510 Hb_170077_020 Hb_170077_020 Hb_000334_090--Hb_170077_020 Hb_002304_110 Hb_002304_110 Hb_000334_090--Hb_002304_110 Hb_000352_360 Hb_000352_360 Hb_000334_090--Hb_000352_360 Hb_002224_020 Hb_002224_020 Hb_003427_030--Hb_002224_020 Hb_000185_180 Hb_000185_180 Hb_003427_030--Hb_000185_180 Hb_007477_010 Hb_007477_010 Hb_003427_030--Hb_007477_010 Hb_149882_010 Hb_149882_010 Hb_003427_030--Hb_149882_010 Hb_087992_010 Hb_087992_010 Hb_003427_030--Hb_087992_010 Hb_003427_030--Hb_000789_160 Hb_000331_630 Hb_000331_630 Hb_000789_160--Hb_000331_630 Hb_000614_300 Hb_000614_300 Hb_000789_160--Hb_000614_300 Hb_000789_160--Hb_000207_060 Hb_002263_050 Hb_002263_050 Hb_000789_160--Hb_002263_050 Hb_000163_170 Hb_000163_170 Hb_000789_160--Hb_000163_170 Hb_003090_220 Hb_003090_220 Hb_000207_060--Hb_003090_220 Hb_001818_010 Hb_001818_010 Hb_000207_060--Hb_001818_010 Hb_000207_060--Hb_004705_060 Hb_009367_070 Hb_009367_070 Hb_000207_060--Hb_009367_070 Hb_000207_060--Hb_000331_630 Hb_000408_060 Hb_000408_060 Hb_000207_060--Hb_000408_060 Hb_034713_010--Hb_009367_070 Hb_140627_040 Hb_140627_040 Hb_034713_010--Hb_140627_040 Hb_034713_010--Hb_002304_110 Hb_034713_010--Hb_004705_060 Hb_001898_030 Hb_001898_030 Hb_034713_010--Hb_001898_030 Hb_004112_080 Hb_004112_080 Hb_034713_010--Hb_004112_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0490936 0.0217922 0.793662 2.64369 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.272956 0.296556

CAGE analysis