Hb_001213_080

Information

Type -
Description -
Location Contig1213: 117560-119635
Sequence    

Annotation

kegg
ID rcu:RCOM_0085870
description tubulin beta chain, putative
nr
ID XP_012087949.1
description PREDICTED: tubulin beta chain-like [Jatropha curcas]
swissprot
ID P18025
description Tubulin beta-1 chain OS=Zea mays GN=TUBB1 PE=2 SV=1
trembl
ID A0A067JY80
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25073 PE=3 SV=1
Gene Ontology
ID GO:0005874
description tubulin beta-2 chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001213_080 0.0 - - PREDICTED: tubulin beta chain-like [Jatropha curcas]
2 Hb_007313_050 0.0736239423 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
3 Hb_148914_020 0.0795104899 - - PREDICTED: uncharacterized protein LOC105637821 [Jatropha curcas]
4 Hb_001059_050 0.0909120226 - - PREDICTED: putative F-box/LRR-repeat protein At3g18150 [Jatropha curcas]
5 Hb_000286_210 0.0959173553 - - hypothetical protein EUGRSUZ_C00018 [Eucalyptus grandis]
6 Hb_048937_010 0.0994130606 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1 [Nelumbo nucifera]
7 Hb_000128_090 0.104055819 - - Reticuline oxidase precursor, putative [Ricinus communis]
8 Hb_021443_020 0.1060742481 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
9 Hb_005900_020 0.1181612493 - - -
10 Hb_035006_010 0.1219009463 - - hypothetical protein POPTR_0017s11350g [Populus trichocarpa]
11 Hb_145268_010 0.1230077128 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Jatropha curcas]
12 Hb_003939_090 0.124051226 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
13 Hb_001019_140 0.127073559 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
14 Hb_151616_010 0.1294377163 - - -
15 Hb_002894_040 0.1315667121 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002035_020 0.1316509129 transcription factor TF Family: TRAF hypothetical protein B456_011G050200 [Gossypium raimondii]
17 Hb_005389_090 0.1417496182 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
18 Hb_002049_030 0.1418791197 - - PREDICTED: uncharacterized protein LOC105635940 isoform X3 [Jatropha curcas]
19 Hb_132517_010 0.1462124224 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like isoform X3 [Populus euphratica]
20 Hb_038718_010 0.1475736336 - - Disease resistance protein RFL1, putative [Ricinus communis]

Gene co-expression network

sample Hb_001213_080 Hb_001213_080 Hb_007313_050 Hb_007313_050 Hb_001213_080--Hb_007313_050 Hb_148914_020 Hb_148914_020 Hb_001213_080--Hb_148914_020 Hb_001059_050 Hb_001059_050 Hb_001213_080--Hb_001059_050 Hb_000286_210 Hb_000286_210 Hb_001213_080--Hb_000286_210 Hb_048937_010 Hb_048937_010 Hb_001213_080--Hb_048937_010 Hb_000128_090 Hb_000128_090 Hb_001213_080--Hb_000128_090 Hb_021443_020 Hb_021443_020 Hb_007313_050--Hb_021443_020 Hb_003939_090 Hb_003939_090 Hb_007313_050--Hb_003939_090 Hb_007313_050--Hb_001059_050 Hb_035006_010 Hb_035006_010 Hb_007313_050--Hb_035006_010 Hb_007313_050--Hb_000286_210 Hb_148914_020--Hb_000128_090 Hb_005900_020 Hb_005900_020 Hb_148914_020--Hb_005900_020 Hb_148914_020--Hb_007313_050 Hb_072670_010 Hb_072670_010 Hb_148914_020--Hb_072670_010 Hb_106728_020 Hb_106728_020 Hb_148914_020--Hb_106728_020 Hb_001059_050--Hb_000286_210 Hb_151616_010 Hb_151616_010 Hb_001059_050--Hb_151616_010 Hb_001059_050--Hb_021443_020 Hb_132517_010 Hb_132517_010 Hb_001059_050--Hb_132517_010 Hb_000286_210--Hb_151616_010 Hb_000286_210--Hb_021443_020 Hb_003012_010 Hb_003012_010 Hb_000286_210--Hb_003012_010 Hb_002639_120 Hb_002639_120 Hb_000286_210--Hb_002639_120 Hb_145268_010 Hb_145268_010 Hb_048937_010--Hb_145268_010 Hb_001019_140 Hb_001019_140 Hb_048937_010--Hb_001019_140 Hb_004096_140 Hb_004096_140 Hb_048937_010--Hb_004096_140 Hb_048937_010--Hb_000128_090 Hb_002035_020 Hb_002035_020 Hb_048937_010--Hb_002035_020 Hb_038718_010 Hb_038718_010 Hb_000128_090--Hb_038718_010 Hb_000128_090--Hb_145268_010 Hb_010642_010 Hb_010642_010 Hb_000128_090--Hb_010642_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0415155 0.0115656 0.0563303 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0105435 0

CAGE analysis