Hb_001213_140

Information

Type -
Description -
Location Contig1213: 139421-142644
Sequence    

Annotation

kegg
ID vvi:100247795
description uncharacterized protein At1g04910
nr
ID XP_012087944.1
description PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
swissprot
ID Q8W486
description Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1
trembl
ID A0A067JWW8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25069 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06530: 139400-141157 , PASA_asmbl_06531: 141324-142523
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001213_140 0.0 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
2 Hb_000827_090 0.0722825702 - - PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]
3 Hb_000777_020 0.0760589689 - - PREDICTED: 3-ketoacyl-CoA synthase 11 [Jatropha curcas]
4 Hb_000221_280 0.0969700287 - - PREDICTED: protein EXORDIUM-like [Populus euphratica]
5 Hb_010142_040 0.0982029489 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
6 Hb_000731_020 0.1096122381 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]
7 Hb_003071_040 0.1124640313 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
8 Hb_000313_190 0.1172409747 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
9 Hb_000529_050 0.1202288466 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
10 Hb_000417_230 0.1206371276 - - conserved hypothetical protein [Ricinus communis]
11 Hb_027905_010 0.1265471118 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
12 Hb_098175_010 0.12711282 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
13 Hb_001257_120 0.1287581295 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
14 Hb_019026_030 0.1308114728 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
15 Hb_007441_150 0.1345297055 - - Ankyrin repeat family protein [Theobroma cacao]
16 Hb_029238_020 0.135808002 - - PREDICTED: expansin-like A1 [Jatropha curcas]
17 Hb_010573_030 0.1385913993 - - conserved hypothetical protein [Ricinus communis]
18 Hb_172240_010 0.1413790003 - - PREDICTED: uncharacterized protein LOC105795660 [Gossypium raimondii]
19 Hb_003800_010 0.141447613 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
20 Hb_004143_050 0.1414872277 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]

Gene co-expression network

sample Hb_001213_140 Hb_001213_140 Hb_000827_090 Hb_000827_090 Hb_001213_140--Hb_000827_090 Hb_000777_020 Hb_000777_020 Hb_001213_140--Hb_000777_020 Hb_000221_280 Hb_000221_280 Hb_001213_140--Hb_000221_280 Hb_010142_040 Hb_010142_040 Hb_001213_140--Hb_010142_040 Hb_000731_020 Hb_000731_020 Hb_001213_140--Hb_000731_020 Hb_003071_040 Hb_003071_040 Hb_001213_140--Hb_003071_040 Hb_000827_090--Hb_010142_040 Hb_000827_090--Hb_000777_020 Hb_000827_090--Hb_000221_280 Hb_032920_040 Hb_032920_040 Hb_000827_090--Hb_032920_040 Hb_000827_090--Hb_000731_020 Hb_027905_010 Hb_027905_010 Hb_000777_020--Hb_027905_010 Hb_000777_020--Hb_010142_040 Hb_001195_650 Hb_001195_650 Hb_000777_020--Hb_001195_650 Hb_005389_090 Hb_005389_090 Hb_000777_020--Hb_005389_090 Hb_000221_280--Hb_000731_020 Hb_000529_050 Hb_000529_050 Hb_000221_280--Hb_000529_050 Hb_000313_190 Hb_000313_190 Hb_000221_280--Hb_000313_190 Hb_029622_080 Hb_029622_080 Hb_000221_280--Hb_029622_080 Hb_000221_280--Hb_003071_040 Hb_010142_040--Hb_032920_040 Hb_010142_040--Hb_027905_010 Hb_010142_040--Hb_000221_280 Hb_019978_010 Hb_019978_010 Hb_000731_020--Hb_019978_010 Hb_000731_020--Hb_000313_190 Hb_006916_220 Hb_006916_220 Hb_000731_020--Hb_006916_220 Hb_004724_310 Hb_004724_310 Hb_000731_020--Hb_004724_310 Hb_000731_020--Hb_003071_040 Hb_001098_020 Hb_001098_020 Hb_003071_040--Hb_001098_020 Hb_098175_010 Hb_098175_010 Hb_003071_040--Hb_098175_010 Hb_003071_040--Hb_000313_190 Hb_010573_030 Hb_010573_030 Hb_003071_040--Hb_010573_030 Hb_003071_040--Hb_000529_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.107286 19.7392 4.54306 11.8681 0.0193904 0.0726902
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.13647 0.19686 0.237515 0.341781 0.680646

CAGE analysis