Hb_001214_030

Information

Type -
Description -
Location Contig1214: 17719-21146
Sequence    

Annotation

kegg
ID pop:POPTR_0006s10280g
description POPTRDRAFT_560927; hypothetical protein
nr
ID XP_002308226.1
description hypothetical protein POPTR_0006s10280g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HCY2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s10280g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06543: 19775-20150 , PASA_asmbl_06544: 17728-20971 , PASA_asmbl_06545: 17728-21121 , PASA_asmbl_06546: 18484-18724 , PASA_asmbl_06547: 18808-19091
cDNA
(Sanger)
(ID:Location)		 040_C02.ab1: 17728-20971

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001214_030 0.0 - - hypothetical protein POPTR_0006s10280g [Populus trichocarpa]
2 Hb_000190_060 0.0636018049 - - PREDICTED: uncharacterized protein LOC105644688 isoform X1 [Jatropha curcas]
3 Hb_042202_010 0.0889342861 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]
4 Hb_002477_240 0.0892434007 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
5 Hb_003058_070 0.0981930694 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
6 Hb_000417_110 0.1027640547 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
7 Hb_003001_060 0.1031317237 - - wound-responsive family protein [Populus trichocarpa]
8 Hb_010261_060 0.104991133 - - unnamed protein product [Coffea canephora]
9 Hb_171900_050 0.1052121481 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000025_530 0.1064034228 - - PREDICTED: reactive oxygen species modulator 1 [Jatropha curcas]
11 Hb_001538_120 0.1085414188 - - PREDICTED: FAD-linked sulfhydryl oxidase ERV1 [Jatropha curcas]
12 Hb_000061_480 0.1090390814 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
13 Hb_000454_050 0.1116608318 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 [Vitis vinifera]
14 Hb_003878_190 0.112352493 - - hypothetical protein POPTR_0011s11040g [Populus trichocarpa]
15 Hb_009252_130 0.1127216194 - - Deletion of SUV3 suppressor 1(I) isoform 1 [Theobroma cacao]
16 Hb_001951_110 0.114628681 - - PREDICTED: DNA-binding protein DDB_G0278111 [Jatropha curcas]
17 Hb_005701_020 0.1146838251 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
18 Hb_000703_140 0.1163085658 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
19 Hb_004117_290 0.116480835 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002234_210 0.1172057635 - - hypothetical protein POPTR_0012s13380g [Populus trichocarpa]

Gene co-expression network

sample Hb_001214_030 Hb_001214_030 Hb_000190_060 Hb_000190_060 Hb_001214_030--Hb_000190_060 Hb_042202_010 Hb_042202_010 Hb_001214_030--Hb_042202_010 Hb_002477_240 Hb_002477_240 Hb_001214_030--Hb_002477_240 Hb_003058_070 Hb_003058_070 Hb_001214_030--Hb_003058_070 Hb_000417_110 Hb_000417_110 Hb_001214_030--Hb_000417_110 Hb_003001_060 Hb_003001_060 Hb_001214_030--Hb_003001_060 Hb_009252_130 Hb_009252_130 Hb_000190_060--Hb_009252_130 Hb_000190_060--Hb_000417_110 Hb_000483_160 Hb_000483_160 Hb_000190_060--Hb_000483_160 Hb_000025_530 Hb_000025_530 Hb_000190_060--Hb_000025_530 Hb_000190_060--Hb_003058_070 Hb_042202_010--Hb_002477_240 Hb_001754_150 Hb_001754_150 Hb_042202_010--Hb_001754_150 Hb_042202_010--Hb_000417_110 Hb_000684_090 Hb_000684_090 Hb_042202_010--Hb_000684_090 Hb_042202_010--Hb_000025_530 Hb_002477_240--Hb_001754_150 Hb_004738_080 Hb_004738_080 Hb_002477_240--Hb_004738_080 Hb_000260_050 Hb_000260_050 Hb_002477_240--Hb_000260_050 Hb_000703_140 Hb_000703_140 Hb_002477_240--Hb_000703_140 Hb_009767_120 Hb_009767_120 Hb_002477_240--Hb_009767_120 Hb_003058_070--Hb_000417_110 Hb_003058_070--Hb_003001_060 Hb_002234_210 Hb_002234_210 Hb_003058_070--Hb_002234_210 Hb_000365_380 Hb_000365_380 Hb_003058_070--Hb_000365_380 Hb_000798_030 Hb_000798_030 Hb_003058_070--Hb_000798_030 Hb_000634_050 Hb_000634_050 Hb_000417_110--Hb_000634_050 Hb_001584_070 Hb_001584_070 Hb_000417_110--Hb_001584_070 Hb_001951_110 Hb_001951_110 Hb_000417_110--Hb_001951_110 Hb_000417_110--Hb_000798_030 Hb_000417_110--Hb_003001_060 Hb_003878_190 Hb_003878_190 Hb_003001_060--Hb_003878_190 Hb_011805_080 Hb_011805_080 Hb_003001_060--Hb_011805_080 Hb_002893_060 Hb_002893_060 Hb_003001_060--Hb_002893_060 Hb_001369_650 Hb_001369_650 Hb_003001_060--Hb_001369_650
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
199.027 25.5319 62.321 45.3921 276.956 163.971
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
290.365 464.157 122.69 55.3266 49.9894

CAGE analysis