Hb_001214_040

Information

Type -
Description -
Location Contig1214: 22824-32464
Sequence    

Annotation

kegg
ID rcu:RCOM_0186680
description hypothetical protein
nr
ID XP_012087829.1
description PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
swissprot
ID Q8LED3
description Protein trichome birefringence-like 3 OS=Arabidopsis thaliana GN=TBL3 PE=2 SV=1
trembl
ID B9T1I9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0186680 PE=4 SV=1
Gene Ontology
ID GO:0005794
description protein trichome birefringence-like 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06548: 22789-32389
cDNA
(Sanger)
(ID:Location)		 044_M12.ab1: 30790-32389

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001214_040 0.0 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
2 Hb_001141_250 0.1421877911 - - hypothetical protein glysoja_047929, partial [Glycine soja]
3 Hb_008762_010 0.1463908202 - - dopamine beta-monooxygenase, putative [Ricinus communis]
4 Hb_000130_350 0.1471408908 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
5 Hb_000236_230 0.149528455 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
6 Hb_116701_010 0.1503347822 - - hypothetical protein POPTR_0005s19410g [Populus trichocarpa]
7 Hb_000165_020 0.1555757083 - - PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
8 Hb_000176_080 0.1568934097 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g30520 [Jatropha curcas]
9 Hb_000428_040 0.158487287 - - PREDICTED: protein trichome birefringence-like 31 [Populus euphratica]
10 Hb_150486_010 0.1631343849 - - hypothetical protein CICLE_v100116733mg, partial [Citrus clementina]
11 Hb_005183_130 0.1743818505 - - glycogenin, putative [Ricinus communis]
12 Hb_025645_020 0.1790605821 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
13 Hb_000094_170 0.1791458161 - - PREDICTED: uncharacterized protein LOC105633781 [Jatropha curcas]
14 Hb_003623_040 0.1792941968 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
15 Hb_000108_180 0.1857338297 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
16 Hb_001366_110 0.1936884544 - - conserved hypothetical protein [Ricinus communis]
17 Hb_158092_050 0.1945961397 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
18 Hb_004586_410 0.1951307907 - - ring finger protein, putative [Ricinus communis]
19 Hb_001001_070 0.1992810342 - - PREDICTED: uncharacterized protein LOC105633663 [Jatropha curcas]
20 Hb_001232_060 0.2021750972 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001214_040 Hb_001214_040 Hb_001141_250 Hb_001141_250 Hb_001214_040--Hb_001141_250 Hb_008762_010 Hb_008762_010 Hb_001214_040--Hb_008762_010 Hb_000130_350 Hb_000130_350 Hb_001214_040--Hb_000130_350 Hb_000236_230 Hb_000236_230 Hb_001214_040--Hb_000236_230 Hb_116701_010 Hb_116701_010 Hb_001214_040--Hb_116701_010 Hb_000165_020 Hb_000165_020 Hb_001214_040--Hb_000165_020 Hb_001141_250--Hb_008762_010 Hb_000094_170 Hb_000094_170 Hb_001141_250--Hb_000094_170 Hb_001141_250--Hb_000130_350 Hb_000417_220 Hb_000417_220 Hb_001141_250--Hb_000417_220 Hb_000428_040 Hb_000428_040 Hb_001141_250--Hb_000428_040 Hb_031284_060 Hb_031284_060 Hb_008762_010--Hb_031284_060 Hb_008762_010--Hb_000130_350 Hb_008762_010--Hb_116701_010 Hb_001189_080 Hb_001189_080 Hb_008762_010--Hb_001189_080 Hb_158092_050 Hb_158092_050 Hb_008762_010--Hb_158092_050 Hb_005523_030 Hb_005523_030 Hb_008762_010--Hb_005523_030 Hb_000130_350--Hb_116701_010 Hb_000130_350--Hb_158092_050 Hb_000130_350--Hb_031284_060 Hb_000173_240 Hb_000173_240 Hb_000130_350--Hb_000173_240 Hb_000130_350--Hb_000428_040 Hb_000236_230--Hb_000428_040 Hb_001366_110 Hb_001366_110 Hb_000236_230--Hb_001366_110 Hb_000251_120 Hb_000251_120 Hb_000236_230--Hb_000251_120 Hb_000236_230--Hb_116701_010 Hb_000236_230--Hb_000130_350 Hb_005183_130 Hb_005183_130 Hb_000236_230--Hb_005183_130 Hb_116701_010--Hb_158092_050 Hb_116701_010--Hb_000428_040 Hb_116701_010--Hb_000173_240 Hb_116701_010--Hb_001366_110 Hb_147745_010 Hb_147745_010 Hb_000165_020--Hb_147745_010 Hb_150486_010 Hb_150486_010 Hb_000165_020--Hb_150486_010 Hb_000165_020--Hb_000236_230 Hb_000165_020--Hb_001366_110 Hb_000165_020--Hb_116701_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.3608 1.01169 2.05312 51.2558 3.00326 2.14997
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.7242 0.859135 0.511087 0.270479 27.6555

CAGE analysis