Hb_001214_050

Information

Type -
Description -
Location Contig1214: 43543-45620
Sequence    

Annotation

kegg
ID rcu:RCOM_0186790
description glutaredoxin, grx, putative
nr
ID XP_012087830.1
description PREDICTED: bifunctional monothiol glutaredoxin-S16, chloroplastic [Jatropha curcas]
swissprot
ID Q8H7F6
description Bifunctional monothiol glutaredoxin-S16, chloroplastic OS=Arabidopsis thaliana GN=GRXS16 PE=1 SV=2
trembl
ID A0A067JXZ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24993 PE=4 SV=1
Gene Ontology
ID GO:0009055
description monothiol glutaredoxin- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06549: 43564-45821
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001214_050 0.0 - - PREDICTED: bifunctional monothiol glutaredoxin-S16, chloroplastic [Jatropha curcas]
2 Hb_002762_110 0.0706848253 - - conserved hypothetical protein [Ricinus communis]
3 Hb_009778_060 0.0786351591 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
4 Hb_000077_150 0.0789506958 - - PREDICTED: riboflavin synthase [Jatropha curcas]
5 Hb_001723_060 0.0869576296 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: LOW QUALITY PROTEIN: dihydrolipoyl dehydrogenase 2, mitochondrial [Populus euphratica]
6 Hb_000032_500 0.0876974281 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
7 Hb_001195_770 0.0913886781 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
8 Hb_005511_140 0.0915704079 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
9 Hb_001195_450 0.092084121 - - PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]
10 Hb_008705_020 0.0943331398 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
11 Hb_000983_070 0.0946456757 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003053_110 0.0966195876 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
13 Hb_001449_070 0.0974994895 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001677_220 0.0975639247 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
15 Hb_004644_030 0.0982605348 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
16 Hb_055690_010 0.0993076288 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
17 Hb_002232_390 0.1005783555 - - PREDICTED: uncharacterized protein LOC105635994 [Jatropha curcas]
18 Hb_000358_020 0.1015503201 - - PREDICTED: uncharacterized protein C05D11.7-like [Jatropha curcas]
19 Hb_000909_080 0.1018907984 - - PREDICTED: inosine-5'-monophosphate dehydrogenase 2-like [Jatropha curcas]
20 Hb_001138_060 0.1020516323 - - hypothetical protein CICLE_v10028086mg [Citrus clementina]

Gene co-expression network

sample Hb_001214_050 Hb_001214_050 Hb_002762_110 Hb_002762_110 Hb_001214_050--Hb_002762_110 Hb_009778_060 Hb_009778_060 Hb_001214_050--Hb_009778_060 Hb_000077_150 Hb_000077_150 Hb_001214_050--Hb_000077_150 Hb_001723_060 Hb_001723_060 Hb_001214_050--Hb_001723_060 Hb_000032_500 Hb_000032_500 Hb_001214_050--Hb_000032_500 Hb_001195_770 Hb_001195_770 Hb_001214_050--Hb_001195_770 Hb_004644_030 Hb_004644_030 Hb_002762_110--Hb_004644_030 Hb_000622_290 Hb_000622_290 Hb_002762_110--Hb_000622_290 Hb_000107_430 Hb_000107_430 Hb_002762_110--Hb_000107_430 Hb_003053_110 Hb_003053_110 Hb_002762_110--Hb_003053_110 Hb_002762_110--Hb_000077_150 Hb_000482_040 Hb_000482_040 Hb_009778_060--Hb_000482_040 Hb_001195_450 Hb_001195_450 Hb_009778_060--Hb_001195_450 Hb_009778_060--Hb_001723_060 Hb_002374_250 Hb_002374_250 Hb_009778_060--Hb_002374_250 Hb_000635_060 Hb_000635_060 Hb_009778_060--Hb_000635_060 Hb_000077_150--Hb_004644_030 Hb_003106_190 Hb_003106_190 Hb_000077_150--Hb_003106_190 Hb_002078_340 Hb_002078_340 Hb_000077_150--Hb_002078_340 Hb_002811_010 Hb_002811_010 Hb_000077_150--Hb_002811_010 Hb_001723_060--Hb_001195_450 Hb_001723_060--Hb_002762_110 Hb_001138_060 Hb_001138_060 Hb_001723_060--Hb_001138_060 Hb_001723_060--Hb_000482_040 Hb_134849_010 Hb_134849_010 Hb_000032_500--Hb_134849_010 Hb_001677_220 Hb_001677_220 Hb_000032_500--Hb_001677_220 Hb_001105_040 Hb_001105_040 Hb_000032_500--Hb_001105_040 Hb_000941_100 Hb_000941_100 Hb_000032_500--Hb_000941_100 Hb_000200_010 Hb_000200_010 Hb_000032_500--Hb_000200_010 Hb_008705_020 Hb_008705_020 Hb_000032_500--Hb_008705_020 Hb_001195_770--Hb_008705_020 Hb_001195_770--Hb_003053_110 Hb_001195_770--Hb_000941_100 Hb_000816_200 Hb_000816_200 Hb_001195_770--Hb_000816_200 Hb_006907_060 Hb_006907_060 Hb_001195_770--Hb_006907_060 Hb_001195_770--Hb_002762_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.4278 10.8941 12.9244 14.1012 6.16776 5.76324
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.80048 13.5594 9.21737 11.804 36.2853

CAGE analysis