Hb_001214_080

Information

Type -
Description -
Location Contig1214: 78421-79146
Sequence    

Annotation

kegg
ID rcu:RCOM_0186920
description Transcription factor HBP-1b, putative
nr
ID XP_012087834.1
description PREDICTED: transcription factor HBP-1b(c38)-like [Jatropha curcas]
swissprot
ID O24160
description TGACG-sequence-specific DNA-binding protein TGA-2.1 OS=Nicotiana tabacum GN=TGA21 PE=1 SV=1
trembl
ID A0A067JNP4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24997 PE=4 SV=1
Gene Ontology
ID GO:0043565
description transcription factor hbp-1b -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001214_080 0.0 - - PREDICTED: transcription factor HBP-1b(c38)-like [Jatropha curcas]
2 Hb_001247_330 0.1748311202 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
3 Hb_002150_050 0.1930668372 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002784_150 0.2091944745 - - hypothetical protein POPTR_0001s06620g [Populus trichocarpa]
5 Hb_000033_040 0.2118904638 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001767_050 0.2191769817 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000962_080 0.2223272671 - - PREDICTED: uncharacterized protein LOC105131773 [Populus euphratica]
8 Hb_005520_010 0.2319349729 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
9 Hb_086692_020 0.2421955838 - - PREDICTED: protein kinase APK1B, chloroplastic-like [Jatropha curcas]
10 Hb_027337_120 0.2482420511 - - PREDICTED: uncharacterized protein LOC104430249 [Eucalyptus grandis]
11 Hb_000703_050 0.2491913423 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000572_040 0.2549198633 - - hypothetical protein POPTR_0006s14815g [Populus trichocarpa]
13 Hb_005321_010 0.2550736453 - - PREDICTED: uncharacterized protein LOC105644542 [Jatropha curcas]
14 Hb_001146_060 0.2580411561 transcription factor TF Family: bHLH lMYC5 [Hevea brasiliensis]
15 Hb_002588_040 0.2596330696 - - Pathogenesis-related protein 1 [Theobroma cacao]
16 Hb_000062_300 0.2606737818 - - PREDICTED: uncharacterized protein LOC105644761 [Jatropha curcas]
17 Hb_000352_160 0.2616879597 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004968_070 0.2629288491 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000002_170 0.2645959174 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B [Jatropha curcas]
20 Hb_012573_010 0.2685087747 - - PREDICTED: uncharacterized protein LOC105639338 [Jatropha curcas]

Gene co-expression network

sample Hb_001214_080 Hb_001214_080 Hb_001247_330 Hb_001247_330 Hb_001214_080--Hb_001247_330 Hb_002150_050 Hb_002150_050 Hb_001214_080--Hb_002150_050 Hb_002784_150 Hb_002784_150 Hb_001214_080--Hb_002784_150 Hb_000033_040 Hb_000033_040 Hb_001214_080--Hb_000033_040 Hb_001767_050 Hb_001767_050 Hb_001214_080--Hb_001767_050 Hb_000962_080 Hb_000962_080 Hb_001214_080--Hb_000962_080 Hb_000703_050 Hb_000703_050 Hb_001247_330--Hb_000703_050 Hb_001247_330--Hb_000962_080 Hb_001247_330--Hb_001767_050 Hb_001146_060 Hb_001146_060 Hb_001247_330--Hb_001146_060 Hb_001369_210 Hb_001369_210 Hb_001247_330--Hb_001369_210 Hb_061383_010 Hb_061383_010 Hb_002150_050--Hb_061383_010 Hb_027337_120 Hb_027337_120 Hb_002150_050--Hb_027337_120 Hb_002150_050--Hb_001247_330 Hb_000563_260 Hb_000563_260 Hb_002150_050--Hb_000563_260 Hb_002150_050--Hb_001146_060 Hb_004968_070 Hb_004968_070 Hb_002784_150--Hb_004968_070 Hb_002784_150--Hb_000033_040 Hb_058143_010 Hb_058143_010 Hb_002784_150--Hb_058143_010 Hb_005520_010 Hb_005520_010 Hb_002784_150--Hb_005520_010 Hb_086692_020 Hb_086692_020 Hb_002784_150--Hb_086692_020 Hb_000033_040--Hb_027337_120 Hb_027892_040 Hb_027892_040 Hb_000033_040--Hb_027892_040 Hb_000589_160 Hb_000589_160 Hb_000033_040--Hb_000589_160 Hb_000033_040--Hb_058143_010 Hb_000078_020 Hb_000078_020 Hb_000033_040--Hb_000078_020 Hb_001767_050--Hb_001369_210 Hb_000352_160 Hb_000352_160 Hb_001767_050--Hb_000352_160 Hb_001767_050--Hb_000962_080 Hb_001767_050--Hb_001146_060 Hb_002588_040 Hb_002588_040 Hb_001767_050--Hb_002588_040 Hb_023661_060 Hb_023661_060 Hb_000962_080--Hb_023661_060 Hb_000962_080--Hb_000703_050 Hb_000002_170 Hb_000002_170 Hb_000962_080--Hb_000002_170 Hb_000962_080--Hb_001369_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.392841 0.404905 0.496959 0.246251 0.189976 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0769282 16.632 3.68399 0.466823 0.360421

CAGE analysis