Hb_001214_090

Information

Type -
Description -
Location Contig1214: 81647-87719
Sequence    

Annotation

kegg
ID rcu:RCOM_0186930
description acyl-CoA dehydrogenase, putative (EC:1.3.3.6)
nr
ID XP_012087835.1
description PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal [Jatropha curcas]
swissprot
ID Q96329
description Acyl-coenzyme A oxidase 4, peroxisomal OS=Arabidopsis thaliana GN=ACX4 PE=1 SV=1
trembl
ID A0A067JKL7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24996 PE=3 SV=1
Gene Ontology
ID GO:0003995
description acyl-coenzyme a oxidase peroxisomal

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06556: 81693-87659 , PASA_asmbl_06557: 85931-86060 , PASA_asmbl_06558: 81700-85888
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001214_090 0.0 - - PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal [Jatropha curcas]
2 Hb_001623_160 0.0943478042 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Jatropha curcas]
3 Hb_016522_010 0.0957350866 - - PREDICTED: short-chain dehydrogenase/reductase 2b-like [Jatropha curcas]
4 Hb_010863_010 0.1027276634 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
5 Hb_000190_090 0.1055829945 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
6 Hb_119494_010 0.1097823796 - - PREDICTED: box C/D snoRNA protein 1 [Jatropha curcas]
7 Hb_003266_100 0.1108020237 - - Isomerase protein [Gossypium arboreum]
8 Hb_042474_010 0.1113330017 - - PREDICTED: adenylyltransferase and sulfurtransferase MOCS3 [Jatropha curcas]
9 Hb_016347_010 0.1129619555 - - protein transporter, putative [Ricinus communis]
10 Hb_001170_030 0.1140379739 - - synaptonemal complex protein, putative [Ricinus communis]
11 Hb_002005_100 0.1151099519 - - -
12 Hb_004079_080 0.1161418222 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
13 Hb_000251_030 0.118186673 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
14 Hb_000209_100 0.1187599861 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X2 [Jatropha curcas]
15 Hb_006452_100 0.1194005372 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
16 Hb_012760_040 0.1209201515 - - PREDICTED: aconitate hydratase 1 [Jatropha curcas]
17 Hb_004064_010 0.1215030107 - - PREDICTED: uncharacterized protein LOC105133340 isoform X1 [Populus euphratica]
18 Hb_012022_080 0.1215288958 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_109002_020 0.1243323206 - - PREDICTED: CTP synthase-like [Jatropha curcas]
20 Hb_023771_010 0.1251444495 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001214_090 Hb_001214_090 Hb_001623_160 Hb_001623_160 Hb_001214_090--Hb_001623_160 Hb_016522_010 Hb_016522_010 Hb_001214_090--Hb_016522_010 Hb_010863_010 Hb_010863_010 Hb_001214_090--Hb_010863_010 Hb_000190_090 Hb_000190_090 Hb_001214_090--Hb_000190_090 Hb_119494_010 Hb_119494_010 Hb_001214_090--Hb_119494_010 Hb_003266_100 Hb_003266_100 Hb_001214_090--Hb_003266_100 Hb_000381_110 Hb_000381_110 Hb_001623_160--Hb_000381_110 Hb_003038_140 Hb_003038_140 Hb_001623_160--Hb_003038_140 Hb_001971_060 Hb_001971_060 Hb_001623_160--Hb_001971_060 Hb_004079_080 Hb_004079_080 Hb_001623_160--Hb_004079_080 Hb_001332_040 Hb_001332_040 Hb_001623_160--Hb_001332_040 Hb_000227_070 Hb_000227_070 Hb_016522_010--Hb_000227_070 Hb_001414_030 Hb_001414_030 Hb_016522_010--Hb_001414_030 Hb_000510_240 Hb_000510_240 Hb_016522_010--Hb_000510_240 Hb_000228_110 Hb_000228_110 Hb_016522_010--Hb_000228_110 Hb_000210_120 Hb_000210_120 Hb_016522_010--Hb_000210_120 Hb_000614_240 Hb_000614_240 Hb_010863_010--Hb_000614_240 Hb_000120_080 Hb_000120_080 Hb_010863_010--Hb_000120_080 Hb_004787_050 Hb_004787_050 Hb_010863_010--Hb_004787_050 Hb_005634_010 Hb_005634_010 Hb_010863_010--Hb_005634_010 Hb_002471_090 Hb_002471_090 Hb_010863_010--Hb_002471_090 Hb_002456_010 Hb_002456_010 Hb_010863_010--Hb_002456_010 Hb_012022_080 Hb_012022_080 Hb_000190_090--Hb_012022_080 Hb_042474_010 Hb_042474_010 Hb_000190_090--Hb_042474_010 Hb_004096_110 Hb_004096_110 Hb_000190_090--Hb_004096_110 Hb_011224_160 Hb_011224_160 Hb_000190_090--Hb_011224_160 Hb_021576_010 Hb_021576_010 Hb_000190_090--Hb_021576_010 Hb_016347_010 Hb_016347_010 Hb_000190_090--Hb_016347_010 Hb_003253_050 Hb_003253_050 Hb_119494_010--Hb_003253_050 Hb_002005_100 Hb_002005_100 Hb_119494_010--Hb_002005_100 Hb_002400_410 Hb_002400_410 Hb_119494_010--Hb_002400_410 Hb_008147_070 Hb_008147_070 Hb_119494_010--Hb_008147_070 Hb_014894_010 Hb_014894_010 Hb_119494_010--Hb_014894_010 Hb_004064_010 Hb_004064_010 Hb_003266_100--Hb_004064_010 Hb_000621_020 Hb_000621_020 Hb_003266_100--Hb_000621_020 Hb_003266_100--Hb_016522_010 Hb_000483_260 Hb_000483_260 Hb_003266_100--Hb_000483_260 Hb_109002_020 Hb_109002_020 Hb_003266_100--Hb_109002_020 Hb_000665_050 Hb_000665_050 Hb_003266_100--Hb_000665_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.8953 16.9314 11.6527 20.6641 7.2151 9.61482
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.5048 20.3966 23.7789 50.1491 18.5875

CAGE analysis