Hb_001214_150

Information

Type -
Description -
Location Contig1214: 148555-154032
Sequence    

Annotation

kegg
ID cit:102624288
description uncharacterized LOC102624288
nr
ID XP_006493600.1
description PREDICTED: uncharacterized protein LOC102624288 [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067LJE6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06561: 147985-148629
cDNA
(Sanger)
(ID:Location)		 006_K19.ab1: 148033-148621 , 027_D12.ab1: 147985-148508

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001214_150 0.0 - - PREDICTED: uncharacterized protein LOC102624288 [Citrus sinensis]
2 Hb_004945_020 0.2168111579 - - PREDICTED: probable calcium-binding protein CML30 [Vitis vinifera]
3 Hb_002631_220 0.2171657949 - - Patellin-4, putative [Ricinus communis]
4 Hb_005946_120 0.2807735274 - - peptidase, putative [Ricinus communis]
5 Hb_101733_040 0.286767617 - - cytochrome P450 CYP71B63v2 [Populus trichocarpa]
6 Hb_171718_020 0.298162453 - - hypothetical protein JCGZ_00274 [Jatropha curcas]
7 Hb_025214_090 0.2981646932 - - clathrin assembly protein, putative [Ricinus communis]
8 Hb_000002_240 0.2989986898 - - PREDICTED: transcription factor bHLH104 [Jatropha curcas]
9 Hb_085364_010 0.3023421917 - - PREDICTED: nicalin-1-like [Populus euphratica]
10 Hb_170098_010 0.3032148798 - - PREDICTED: cullin-1 [Jatropha curcas]
11 Hb_007592_020 0.3048771351 - - acyltransferase, putative [Ricinus communis]
12 Hb_004088_060 0.3056584287 - - hypothetical protein POPTR_0012s01875g [Populus trichocarpa]
13 Hb_005276_170 0.3095325089 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
14 Hb_000011_050 0.3119734715 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
15 Hb_001711_010 0.3135356916 - - -
16 Hb_007136_010 0.3138970978 desease resistance Gene Name: UBA PREDICTED: ATPase WRNIP1 [Jatropha curcas]
17 Hb_009775_040 0.3150375291 - - PREDICTED: probable glutathione S-transferase parC [Vitis vinifera]
18 Hb_014068_050 0.3151023442 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
19 Hb_005725_230 0.3165013408 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
20 Hb_000111_180 0.3168914417 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_001214_150 Hb_001214_150 Hb_004945_020 Hb_004945_020 Hb_001214_150--Hb_004945_020 Hb_002631_220 Hb_002631_220 Hb_001214_150--Hb_002631_220 Hb_005946_120 Hb_005946_120 Hb_001214_150--Hb_005946_120 Hb_101733_040 Hb_101733_040 Hb_001214_150--Hb_101733_040 Hb_171718_020 Hb_171718_020 Hb_001214_150--Hb_171718_020 Hb_025214_090 Hb_025214_090 Hb_001214_150--Hb_025214_090 Hb_004945_020--Hb_005946_120 Hb_004945_020--Hb_002631_220 Hb_005675_060 Hb_005675_060 Hb_004945_020--Hb_005675_060 Hb_131864_030 Hb_131864_030 Hb_004945_020--Hb_131864_030 Hb_126648_010 Hb_126648_010 Hb_004945_020--Hb_126648_010 Hb_002447_160 Hb_002447_160 Hb_002631_220--Hb_002447_160 Hb_089140_010 Hb_089140_010 Hb_002631_220--Hb_089140_010 Hb_007592_020 Hb_007592_020 Hb_002631_220--Hb_007592_020 Hb_002631_220--Hb_126648_010 Hb_000112_100 Hb_000112_100 Hb_005946_120--Hb_000112_100 Hb_020178_010 Hb_020178_010 Hb_005946_120--Hb_020178_010 Hb_000031_330 Hb_000031_330 Hb_005946_120--Hb_000031_330 Hb_000953_080 Hb_000953_080 Hb_005946_120--Hb_000953_080 Hb_000215_350 Hb_000215_350 Hb_101733_040--Hb_000215_350 Hb_002639_100 Hb_002639_100 Hb_101733_040--Hb_002639_100 Hb_001268_120 Hb_001268_120 Hb_101733_040--Hb_001268_120 Hb_000671_170 Hb_000671_170 Hb_101733_040--Hb_000671_170 Hb_001439_230 Hb_001439_230 Hb_101733_040--Hb_001439_230 Hb_006846_020 Hb_006846_020 Hb_101733_040--Hb_006846_020 Hb_000363_350 Hb_000363_350 Hb_171718_020--Hb_000363_350 Hb_001307_190 Hb_001307_190 Hb_171718_020--Hb_001307_190 Hb_000011_050 Hb_000011_050 Hb_171718_020--Hb_000011_050 Hb_014231_020 Hb_014231_020 Hb_171718_020--Hb_014231_020 Hb_000000_340 Hb_000000_340 Hb_171718_020--Hb_000000_340 Hb_000617_310 Hb_000617_310 Hb_171718_020--Hb_000617_310 Hb_004712_170 Hb_004712_170 Hb_025214_090--Hb_004712_170 Hb_004204_050 Hb_004204_050 Hb_025214_090--Hb_004204_050 Hb_000152_510 Hb_000152_510 Hb_025214_090--Hb_000152_510 Hb_002631_320 Hb_002631_320 Hb_025214_090--Hb_002631_320 Hb_025214_090--Hb_007592_020 Hb_007441_110 Hb_007441_110 Hb_025214_090--Hb_007441_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0213771 0.0912203 0.0903092 0.0422622 0.0332671 0.0150702
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0924245 0 0.0616739 0

CAGE analysis