Hb_001214_170

Information

Type -
Description -
Location Contig1214: 156563-158566
Sequence    

Annotation

kegg
ID mtr:MTR_4g083340
description Pyruvate kinase
nr
ID AES90025.2
description pyruvate kinase family protein [Medicago truncatula]
swissprot
ID Q42954
description Pyruvate kinase, cytosolic isozyme OS=Nicotiana tabacum PE=2 SV=1
trembl
ID G7JHK8
description Pyruvate kinase OS=Medicago truncatula GN=MTR_4g083340 PE=3 SV=2
Gene Ontology
ID GO:0000287
description pyruvate cytosolic isozyme

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06562: 155466-156088
cDNA
(Sanger)
(ID:Location)		 004_J20.ab1: 155471-156037 , 016_A03.ab1: 155466-156080 , 043_B04.ab1: 155471-156037

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001214_170 0.0 - - pyruvate kinase family protein [Medicago truncatula]
2 Hb_161023_010 0.1650549852 - - PREDICTED: uncharacterized protein LOC105639929 [Jatropha curcas]
3 Hb_160233_020 0.1723543765 - - -
4 Hb_001944_030 0.1830622024 - - hypothetical protein POPTR_0007s06520g [Populus trichocarpa]
5 Hb_167508_010 0.2138616864 - - hypothetical protein POPTR_0001s27330g [Populus trichocarpa]
6 Hb_007926_010 0.223764006 - - PREDICTED: UPF0554 protein C2orf43 homolog isoform X4 [Citrus sinensis]
7 Hb_113823_010 0.2294623143 - - -
8 Hb_061466_020 0.2378406243 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
9 Hb_004330_030 0.2407950623 - - -
10 Hb_188411_010 0.2543721317 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
11 Hb_014919_020 0.2584633813 - - -
12 Hb_000146_060 0.2594229867 - - -
13 Hb_118346_010 0.2624128356 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
14 Hb_000123_100 0.2683235959 - - Uncharacterized protein TCM_024608 [Theobroma cacao]
15 Hb_007805_020 0.2739304308 - - -
16 Hb_002232_280 0.2741075105 - - PREDICTED: pleiotropic drug resistance protein 1-like isoform X6 [Jatropha curcas]
17 Hb_000189_430 0.2747807859 - - unnamed protein product [Vitis vinifera]
18 Hb_129459_010 0.2761324062 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
19 Hb_003740_010 0.277081612 - - conserved hypothetical protein [Ricinus communis]
20 Hb_059301_010 0.2787387284 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]

Gene co-expression network

sample Hb_001214_170 Hb_001214_170 Hb_161023_010 Hb_161023_010 Hb_001214_170--Hb_161023_010 Hb_160233_020 Hb_160233_020 Hb_001214_170--Hb_160233_020 Hb_001944_030 Hb_001944_030 Hb_001214_170--Hb_001944_030 Hb_167508_010 Hb_167508_010 Hb_001214_170--Hb_167508_010 Hb_007926_010 Hb_007926_010 Hb_001214_170--Hb_007926_010 Hb_113823_010 Hb_113823_010 Hb_001214_170--Hb_113823_010 Hb_188411_010 Hb_188411_010 Hb_161023_010--Hb_188411_010 Hb_161023_010--Hb_160233_020 Hb_014919_020 Hb_014919_020 Hb_161023_010--Hb_014919_020 Hb_061466_020 Hb_061466_020 Hb_161023_010--Hb_061466_020 Hb_161023_010--Hb_167508_010 Hb_160233_020--Hb_188411_010 Hb_003740_010 Hb_003740_010 Hb_160233_020--Hb_003740_010 Hb_160233_020--Hb_014919_020 Hb_129459_010 Hb_129459_010 Hb_160233_020--Hb_129459_010 Hb_004330_030 Hb_004330_030 Hb_001944_030--Hb_004330_030 Hb_000260_370 Hb_000260_370 Hb_001944_030--Hb_000260_370 Hb_007645_120 Hb_007645_120 Hb_001944_030--Hb_007645_120 Hb_005535_060 Hb_005535_060 Hb_001944_030--Hb_005535_060 Hb_000189_430 Hb_000189_430 Hb_001944_030--Hb_000189_430 Hb_167508_010--Hb_061466_020 Hb_000003_140 Hb_000003_140 Hb_167508_010--Hb_000003_140 Hb_167508_010--Hb_129459_010 Hb_099990_030 Hb_099990_030 Hb_167508_010--Hb_099990_030 Hb_167508_010--Hb_000189_430 Hb_009189_040 Hb_009189_040 Hb_007926_010--Hb_009189_040 Hb_007805_020 Hb_007805_020 Hb_007926_010--Hb_007805_020 Hb_001916_060 Hb_001916_060 Hb_007926_010--Hb_001916_060 Hb_003222_010 Hb_003222_010 Hb_007926_010--Hb_003222_010 Hb_054436_010 Hb_054436_010 Hb_007926_010--Hb_054436_010 Hb_010979_010 Hb_010979_010 Hb_113823_010--Hb_010979_010 Hb_000123_100 Hb_000123_100 Hb_113823_010--Hb_000123_100 Hb_004524_070 Hb_004524_070 Hb_113823_010--Hb_004524_070 Hb_000146_060 Hb_000146_060 Hb_113823_010--Hb_000146_060 Hb_113823_010--Hb_099990_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8552 7.86985 6.78823 2.45421 12.0878 0.494691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.15652 0.123051 0 0.0500148 0

CAGE analysis