Hb_001214_180

Information

Type -
Description -
Location Contig1214: 159857-161826
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001214_180 0.0 - - -
2 Hb_000120_040 0.108564693 - - -
3 Hb_000417_200 0.1321057798 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein DOT4, chloroplastic [Jatropha curcas]
4 Hb_009778_060 0.1373356506 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
5 Hb_001405_070 0.1383992436 - - PREDICTED: pentatricopeptide repeat-containing protein At3g23020 [Jatropha curcas]
6 Hb_000482_040 0.138434797 - - Protein YME1, putative [Ricinus communis]
7 Hb_001138_060 0.1396667223 - - hypothetical protein CICLE_v10028086mg [Citrus clementina]
8 Hb_032717_060 0.1413467631 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ18 isoform X1 [Jatropha curcas]
9 Hb_001541_070 0.142520109 - - PREDICTED: protein-tyrosine-phosphatase MKP1-like [Jatropha curcas]
10 Hb_000140_270 0.1453248311 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
11 Hb_183612_070 0.145638983 - - unnamed protein product [Vitis vinifera]
12 Hb_001723_060 0.1494340741 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: LOW QUALITY PROTEIN: dihydrolipoyl dehydrogenase 2, mitochondrial [Populus euphratica]
13 Hb_009615_120 0.1519045593 - - gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis thaliana]
14 Hb_000130_220 0.1524536137 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Jatropha curcas]
15 Hb_000329_290 0.1546946288 transcription factor TF Family: GRAS PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 6 [Jatropha curcas]
16 Hb_000656_310 0.1557424331 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
17 Hb_006420_050 0.1578241098 - - helicase, putative [Ricinus communis]
18 Hb_042202_060 0.158145811 - - PREDICTED: probable glycosyltransferase At5g03795 [Jatropha curcas]
19 Hb_012506_040 0.161743137 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
20 Hb_002686_090 0.1627951763 - - PREDICTED: pentatricopeptide repeat-containing protein At4g13650 [Jatropha curcas]

Gene co-expression network

sample Hb_001214_180 Hb_001214_180 Hb_000120_040 Hb_000120_040 Hb_001214_180--Hb_000120_040 Hb_000417_200 Hb_000417_200 Hb_001214_180--Hb_000417_200 Hb_009778_060 Hb_009778_060 Hb_001214_180--Hb_009778_060 Hb_001405_070 Hb_001405_070 Hb_001214_180--Hb_001405_070 Hb_000482_040 Hb_000482_040 Hb_001214_180--Hb_000482_040 Hb_001138_060 Hb_001138_060 Hb_001214_180--Hb_001138_060 Hb_006420_050 Hb_006420_050 Hb_000120_040--Hb_006420_050 Hb_000120_040--Hb_000417_200 Hb_005237_050 Hb_005237_050 Hb_000120_040--Hb_005237_050 Hb_000122_210 Hb_000122_210 Hb_000120_040--Hb_000122_210 Hb_000120_040--Hb_009778_060 Hb_000417_200--Hb_001405_070 Hb_012725_060 Hb_012725_060 Hb_000417_200--Hb_012725_060 Hb_002235_040 Hb_002235_040 Hb_000417_200--Hb_002235_040 Hb_000170_130 Hb_000170_130 Hb_000417_200--Hb_000170_130 Hb_002686_090 Hb_002686_090 Hb_000417_200--Hb_002686_090 Hb_001242_130 Hb_001242_130 Hb_000417_200--Hb_001242_130 Hb_009778_060--Hb_000482_040 Hb_001214_050 Hb_001214_050 Hb_009778_060--Hb_001214_050 Hb_001195_450 Hb_001195_450 Hb_009778_060--Hb_001195_450 Hb_001723_060 Hb_001723_060 Hb_009778_060--Hb_001723_060 Hb_002374_250 Hb_002374_250 Hb_009778_060--Hb_002374_250 Hb_000635_060 Hb_000635_060 Hb_009778_060--Hb_000635_060 Hb_011671_410 Hb_011671_410 Hb_001405_070--Hb_011671_410 Hb_001405_070--Hb_012725_060 Hb_000230_500 Hb_000230_500 Hb_001405_070--Hb_000230_500 Hb_002542_110 Hb_002542_110 Hb_001405_070--Hb_002542_110 Hb_001405_070--Hb_000170_130 Hb_000482_040--Hb_002686_090 Hb_000482_040--Hb_000635_060 Hb_002078_340 Hb_002078_340 Hb_000482_040--Hb_002078_340 Hb_005116_050 Hb_005116_050 Hb_000482_040--Hb_005116_050 Hb_001163_060 Hb_001163_060 Hb_000482_040--Hb_001163_060 Hb_001138_060--Hb_001723_060 Hb_002762_110 Hb_002762_110 Hb_001138_060--Hb_002762_110 Hb_001138_060--Hb_009778_060 Hb_001138_060--Hb_001195_450 Hb_000318_130 Hb_000318_130 Hb_001138_060--Hb_000318_130 Hb_000077_150 Hb_000077_150 Hb_001138_060--Hb_000077_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.375994 0.997782 0.486421 0.706755 0.305262 0.185408
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.520884 1.12636 1.48541 0.600416 2.26703

CAGE analysis