Hb_001214_190

Information

Type -
Description -
Location Contig1214: 165156-167971
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa005574mg
description hypothetical protein
nr
ID KDP24437.1
description hypothetical protein JCGZ_25001 [Jatropha curcas]
swissprot
ID P48619
description Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1
trembl
ID A0A067JKM2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25001 PE=4 SV=1
Gene Ontology
ID GO:0016717
description omega-3 fatty acid chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06566: 165137-168072 , PASA_asmbl_06567: 166536-166969
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001214_190 0.0 - - hypothetical protein JCGZ_25001 [Jatropha curcas]
2 Hb_004449_140 0.1169527064 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
3 Hb_000185_230 0.134885801 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_124951_010 0.1382417553 - - chitinase-like protein [Hevea brasiliensis]
5 Hb_003430_040 0.1422392664 - - spermidine synthase 1, putative [Ricinus communis]
6 Hb_143813_020 0.14290285 transcription factor TF Family: WRKY hypothetical protein POPTR_0006s10950g [Populus trichocarpa]
7 Hb_000684_100 0.1480288543 - - PREDICTED: cell number regulator 8 [Jatropha curcas]
8 Hb_000732_030 0.1486650747 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000959_190 0.1492099422 - - PREDICTED: crossover junction endonuclease EME1B-like [Jatropha curcas]
10 Hb_002600_130 0.1520385136 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]
11 Hb_003549_130 0.1528755604 - - neutral/alkaline invertase [Manihot esculenta]
12 Hb_004957_020 0.1555272545 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000076_100 0.1566847509 - - PREDICTED: septum-promoting GTP-binding protein 1 [Jatropha curcas]
14 Hb_008173_060 0.159871514 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
15 Hb_176472_020 0.1609418043 - - conserved hypothetical protein [Ricinus communis]
16 Hb_074792_010 0.161005645 - - PREDICTED: probable lactoylglutathione lyase, chloroplast [Gossypium raimondii]
17 Hb_003529_180 0.1634305566 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
18 Hb_003938_170 0.1649025336 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Jatropha curcas]
19 Hb_000134_030 0.1680515997 - - PREDICTED: sister chromatid cohesion 1 protein 3-like [Jatropha curcas]
20 Hb_000009_220 0.1688517738 - - PREDICTED: calcium uniporter protein 2, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_001214_190 Hb_001214_190 Hb_004449_140 Hb_004449_140 Hb_001214_190--Hb_004449_140 Hb_000185_230 Hb_000185_230 Hb_001214_190--Hb_000185_230 Hb_124951_010 Hb_124951_010 Hb_001214_190--Hb_124951_010 Hb_003430_040 Hb_003430_040 Hb_001214_190--Hb_003430_040 Hb_143813_020 Hb_143813_020 Hb_001214_190--Hb_143813_020 Hb_000684_100 Hb_000684_100 Hb_001214_190--Hb_000684_100 Hb_176472_020 Hb_176472_020 Hb_004449_140--Hb_176472_020 Hb_004449_140--Hb_003430_040 Hb_074792_010 Hb_074792_010 Hb_004449_140--Hb_074792_010 Hb_003938_170 Hb_003938_170 Hb_004449_140--Hb_003938_170 Hb_002218_100 Hb_002218_100 Hb_004449_140--Hb_002218_100 Hb_005883_070 Hb_005883_070 Hb_000185_230--Hb_005883_070 Hb_000076_100 Hb_000076_100 Hb_000185_230--Hb_000076_100 Hb_000185_230--Hb_124951_010 Hb_001059_090 Hb_001059_090 Hb_000185_230--Hb_001059_090 Hb_000185_230--Hb_176472_020 Hb_002600_130 Hb_002600_130 Hb_124951_010--Hb_002600_130 Hb_000317_190 Hb_000317_190 Hb_124951_010--Hb_000317_190 Hb_124951_010--Hb_000076_100 Hb_163968_010 Hb_163968_010 Hb_124951_010--Hb_163968_010 Hb_000134_030 Hb_000134_030 Hb_124951_010--Hb_000134_030 Hb_003430_040--Hb_074792_010 Hb_000347_140 Hb_000347_140 Hb_003430_040--Hb_000347_140 Hb_003874_010 Hb_003874_010 Hb_003430_040--Hb_003874_010 Hb_000732_030 Hb_000732_030 Hb_003430_040--Hb_000732_030 Hb_000032_200 Hb_000032_200 Hb_003430_040--Hb_000032_200 Hb_000300_710 Hb_000300_710 Hb_003430_040--Hb_000300_710 Hb_004155_020 Hb_004155_020 Hb_143813_020--Hb_004155_020 Hb_143813_020--Hb_000684_100 Hb_001863_160 Hb_001863_160 Hb_143813_020--Hb_001863_160 Hb_001369_470 Hb_001369_470 Hb_143813_020--Hb_001369_470 Hb_005903_020 Hb_005903_020 Hb_143813_020--Hb_005903_020 Hb_000979_060 Hb_000979_060 Hb_000684_100--Hb_000979_060 Hb_004125_060 Hb_004125_060 Hb_000684_100--Hb_004125_060 Hb_000009_220 Hb_000009_220 Hb_000684_100--Hb_000009_220 Hb_001369_030 Hb_001369_030 Hb_000684_100--Hb_001369_030 Hb_000086_430 Hb_000086_430 Hb_000684_100--Hb_000086_430 Hb_000062_360 Hb_000062_360 Hb_000684_100--Hb_000062_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.4753 36.3416 132.238 28.4085 12.0018 11.9667
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.7879 11.2823 16.944 10.8046 5.43543

CAGE analysis