Hb_001215_040

Information

Type -
Description -
Location Contig1215: 142713-144832
Sequence    

Annotation

kegg
ID rcu:RCOM_1248750
description hypothetical protein
nr
ID XP_002527741.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SP22
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1248750 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06572: 142738-144850
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001215_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000312_080 0.0690945582 - - PREDICTED: transmembrane protein 97-like [Jatropha curcas]
3 Hb_000175_540 0.0806044733 - - PREDICTED: uncharacterized protein LOC105634886 [Jatropha curcas]
4 Hb_000023_280 0.0828289497 - - hypothetical protein POPTR_0006s28210g [Populus trichocarpa]
5 Hb_011344_120 0.0835236174 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
6 Hb_001653_020 0.0853959366 transcription factor TF Family: C2H2 rar1, putative [Ricinus communis]
7 Hb_005365_030 0.0891337175 - - hypothetical protein POPTR_0002s24010g [Populus trichocarpa]
8 Hb_000645_090 0.0896536018 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000406_080 0.0914058061 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
10 Hb_000329_110 0.0920457158 - - PREDICTED: uncharacterized protein LOC105643142 [Jatropha curcas]
11 Hb_000431_170 0.0928084985 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
12 Hb_001057_040 0.0936767165 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
13 Hb_000948_160 0.0937353153 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
14 Hb_008173_110 0.0943027976 - - DNA binding protein, putative [Ricinus communis]
15 Hb_005489_060 0.0944496433 - - Anamorsin, putative [Ricinus communis]
16 Hb_000210_120 0.0947894489 - - PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]
17 Hb_000417_040 0.0952597202 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
18 Hb_000610_050 0.0960942647 - - skp1, putative [Ricinus communis]
19 Hb_000032_380 0.0968894335 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002197_050 0.0973218063 - - hypothetical protein CICLE_v10002157mg [Citrus clementina]

Gene co-expression network

sample Hb_001215_040 Hb_001215_040 Hb_000312_080 Hb_000312_080 Hb_001215_040--Hb_000312_080 Hb_000175_540 Hb_000175_540 Hb_001215_040--Hb_000175_540 Hb_000023_280 Hb_000023_280 Hb_001215_040--Hb_000023_280 Hb_011344_120 Hb_011344_120 Hb_001215_040--Hb_011344_120 Hb_001653_020 Hb_001653_020 Hb_001215_040--Hb_001653_020 Hb_005365_030 Hb_005365_030 Hb_001215_040--Hb_005365_030 Hb_000431_170 Hb_000431_170 Hb_000312_080--Hb_000431_170 Hb_002197_050 Hb_002197_050 Hb_000312_080--Hb_002197_050 Hb_005914_170 Hb_005914_170 Hb_000312_080--Hb_005914_170 Hb_005588_060 Hb_005588_060 Hb_000312_080--Hb_005588_060 Hb_003813_050 Hb_003813_050 Hb_000312_080--Hb_003813_050 Hb_000504_070 Hb_000504_070 Hb_000175_540--Hb_000504_070 Hb_004453_050 Hb_004453_050 Hb_000175_540--Hb_004453_050 Hb_028227_070 Hb_028227_070 Hb_000175_540--Hb_028227_070 Hb_109002_020 Hb_109002_020 Hb_000175_540--Hb_109002_020 Hb_000175_540--Hb_000023_280 Hb_010142_030 Hb_010142_030 Hb_000023_280--Hb_010142_030 Hb_003761_010 Hb_003761_010 Hb_000023_280--Hb_003761_010 Hb_004143_040 Hb_004143_040 Hb_000023_280--Hb_004143_040 Hb_000645_090 Hb_000645_090 Hb_000023_280--Hb_000645_090 Hb_000116_410 Hb_000116_410 Hb_000023_280--Hb_000116_410 Hb_007928_030 Hb_007928_030 Hb_011344_120--Hb_007928_030 Hb_011344_120--Hb_005914_170 Hb_001189_070 Hb_001189_070 Hb_011344_120--Hb_001189_070 Hb_009787_030 Hb_009787_030 Hb_011344_120--Hb_009787_030 Hb_004108_220 Hb_004108_220 Hb_011344_120--Hb_004108_220 Hb_000347_240 Hb_000347_240 Hb_011344_120--Hb_000347_240 Hb_002061_040 Hb_002061_040 Hb_001653_020--Hb_002061_040 Hb_000414_130 Hb_000414_130 Hb_001653_020--Hb_000414_130 Hb_008173_110 Hb_008173_110 Hb_001653_020--Hb_008173_110 Hb_003787_010 Hb_003787_010 Hb_001653_020--Hb_003787_010 Hb_003918_010 Hb_003918_010 Hb_001653_020--Hb_003918_010 Hb_124953_020 Hb_124953_020 Hb_005365_030--Hb_124953_020 Hb_029388_020 Hb_029388_020 Hb_005365_030--Hb_029388_020 Hb_002078_140 Hb_002078_140 Hb_005365_030--Hb_002078_140 Hb_002320_040 Hb_002320_040 Hb_005365_030--Hb_002320_040 Hb_001691_140 Hb_001691_140 Hb_005365_030--Hb_001691_140 Hb_027472_040 Hb_027472_040 Hb_005365_030--Hb_027472_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.25156 7.41776 5.23866 11.6027 5.93163 8.9553
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.2823 15.6884 7.90044 12.7372 4.05065

CAGE analysis